RnoEX0046049 @ rn6
Exon Skipping
Gene
ENSRNOG00000008078 | Kcnh6
Description
potassium voltage-gated channel subfamily H member 6 [Source:RGD Symbol;Acc:620304]
Coordinates
chr10:94223777-94225793:+
Coord C1 exon
chr10:94223777-94223970
Coord A exon
chr10:94224981-94225065
Coord C2 exon
chr10:94225637-94225793
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTGCTCTTGTTCCCTACAAGGCA
3' ss Score
5.82
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGAAGAATGACATCTTTGGGGAGCCTGCCAGTCTTCATGCCAGGCCAGGCAAATCTAGCGCAGATGTGCGCGCCCTGACCTACTGCGACCTGCATAAGATCCATCGAGCAGACCTGCTGGAGGTGCTGGACATGTACCCTGCCTTTGCAGACACCTTCTGGAATAAGCTGGAGGTCACCTTCAACCTGCGGGAC
Seq A exon
GCAGATGGGGGTCTCCAGTCAACACCCCGACAGGCCCCAGGCCACCAAGACCCCCAAGGCTTCTTCCTCAATGACAGTCAGTCAG
Seq C2 exon
GTGCCGCCCCTTCCTTGAGCATTTCAGACACATCTGCACTTTGGCCTGAATTGCTACAGCAAATGCCCCCAAGTCCCCCAAACCCACGACAGGACCTGGATTGCTGGCCTCGGGAGCTAGGCTTTAAGTTAGAACAGCTCCAAGCCCAGATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008078_MULTIEX1-2/3=C1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.878 C2=0.453
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=72.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGCAAATCTAGCGCAGAT
R:
TGAAATGCTCAAGGAAGGGGC
Band lengths:
176-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]