DreEX0040895 @ danRer10
Exon Skipping
Gene
ENSDARG00000001803 | kcnh6a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 6a [Source:ZFIN;Acc:ZDB-GENE-040702-5]
Coordinates
chr3:31603248-31605986:-
Coord C1 exon
chr3:31605793-31605986
Coord A exon
chr3:31605602-31605698
Coord C2 exon
chr3:31603248-31603541
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTGAAGCTTATGTGTATCAGGTA
3' ss Score
2.8
5' ss Seq
CTGGTATGA
5' ss Score
6.69
Exon sequences
Seq C1 exon
GTAAGAATGACATTTTCGGGGAGCCCATCAGTCTATATGCCAGGCCGGGGAAGTCAAGCGCTGATGTGAGGGCTCTGACATACTGTGACCTGCATAAGATCCTGAGGGACGACCTGCTGGAGGTGCTGGACATGTACCCCGATTTCTCCGACAACTTCTGGAGCAACTTGGAGATCACGTTCAACCTTCGAGAT
Seq A exon
GTAGACAGAATCATGCACCCAACACCAAGCGAGGACTCAGATTGTGGGTACAGGCGGCCCAGACACCGGAGGAACCCCCTACGGCGAAATCGACCTG
Seq C2 exon
ATGGGATGGACCGGGATGGGATGGACACATACCCAGTCCAGCCCTGTTCTCCTGTGGGGAACCACCGGGGGGCGATACCGCTGTCACAGTGGGATGAGTTGTGTAGTGATGGCAGCCCTGCTTCTCTCTCCAGTGAAGAGGATATGAAGCCTCTGGTGTCCGGCCAGGGGGATATGTACTCACTGGGCACAGAGATGCAGGAATTCTCCCCTTCTGCAGTCAGTCTTATGCCCTCCGCCCACAGCACTGCTTCTGCCATGGCTGGACCGCTGACAGGTGCACATCAGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001803-'12-15,'12-13,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.788 C2=0.768
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=72.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCAAGCGCTGATGTGAGG
R:
TATGTGTCCATCCCATCCCGG
Band lengths:
175-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]