MmuEX6090470 @ mm9
Exon Skipping
Gene
ENSMUSG00000001901 | Kcnh6
Description
potassium voltage-gated channel, subfamily H (eag-related), member 6 [Source:MGI Symbol;Acc:MGI:2684139]
Coordinates
chr11:105885039-105888186:+
Coord C1 exon
chr11:105885039-105885232
Coord A exon
chr11:105887108-105887192
Coord C2 exon
chr11:105888030-105888186
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTGCTCTTGTTCCCTACAAGGCA
3' ss Score
5.82
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGAAGAATGACATCTTTGGGGAGCCTGCCAGTCTCCATGCCAGACCAGGCAAATCAAGCGCCGATGTGCGTGCCCTGACCTACTGCGACCTGCACAAGATCCATCGAGCAGACCTGCTGGAGGTGCTGGACATGTACCCCGCCTTTGCAGATACCTTCTGGAATAAGCTAGAGGTCACCTTCAACCTGCGGGAC
Seq A exon
GCAGATGGGGGTCTCCACTCAACACCCCGACAGGCCCCAGGCAACCAAGACCCCCAAGGCTTCTTCCTCAATGACAGCCAATCAG
Seq C2 exon
GTGCTGCCCCTTCCCTGAGCATTTCAGACACATCTGGGCTTTGGCCTGAATTGCTACAGCAAATGCCCCCAAGTCCCCCAAACCCACGAGAGAAGCTGGATTGCTGGCCTCGGGAGCTAGGCTTTAAGTTAGAACAGCTCCAAGCCCAGATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001901-'11-13,'11-11,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.793 C2=0.409
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=72.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCCCGCCTTTGCAGATAC
R:
CCAGCAATCCAGCTTCTCTCG
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: