DreEX6067946 @ danRer10
Exon Skipping
Gene
ENSDARG00000010296 | kcnh6b
Description
potassium voltage-gated channel, subfamily H (eag-related), member 6b [Source:ZFIN;Acc:ZDB-GENE-121214-55]
Coordinates
chr12:9282940-9301642:+
Coord C1 exon
chr12:9282940-9297625
Coord A exon
chr12:9297715-9297802
Coord C2 exon
chr12:9301358-9301642
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTTAACTGTTTTGTGGTCAGGTT
3' ss Score
8.58
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCTATCCATCTATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCTGTTTTGAATTCAAAACTTTACAAGTGTCAAACTACTTAAAAAACAAGCTTTTAAATTTTCTATCCATTCTTTCTGGTCAGCTCTTAGCTTGACATTTTTTTGTCTTTTCAAGATTGTTTTCTGAGTTCCATAATAAAAATGTCTTGTCCTGTTTCTCCTACAGGTAAGAATGATGTCTTTGGCGAGCCTGTAAACCTCTATGCAGAACCTGGTCACAGTAATGCTGATGTAACCGCACTGACCTACTGTGACCTTCATCGTATTAGAAGAGATGACCTTCTGGAGGTGCTGGACATGTACCCTGCTTTTGGCGAGAGCTTCTGGAGGAACCTGGAAATCACCTTTAACCTGCGAGAT
Seq A exon
GTTGAACAGATGATGCCAAGTGAAAGTTTGGAGTGCAGCTACCAAGCAAGACACCGTCAAAACTTACTGGACAGACGCAACAGGCCCG
Seq C2 exon
GGGGTGCTGCAGATGGCATGGACCAGAATGACTCGTCTCGGCTGTGTTCTGCTCTGGGTCTTCATCATCATCATCATCATCATCATCATCATCCTGCAGCCGCTCACATGCATTGGGAGGATCTGTGCAGCTACTCCACACAGCAGTCCAGTGAAAACCTCAGCCACTGTGAGCTGTGCACCTCTGACACAGAACATCTGGACTACCCTTCACCTGCTGGCAGACTCATTCCACCCAGCGCCTCCGGGGTCAGCAGAGAGATCGGTGTGGAAATGGGCTATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010296-'6-8,'6-7,7-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.367 C2=0.490
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGATGTAACCGCACTGAC
R:
CACAGCCGAGACGAGTCATTC
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]