BtaEX0018828 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016613 | KCNH6
Description
potassium channel, voltage gated eag related subfamily H, member 6 [Source:HGNC Symbol;Acc:HGNC:18862]
Coordinates
chr19:48509979-48512494:+
Coord C1 exon
chr19:48509979-48510066
Coord A exon
chr19:48510580-48510748
Coord C2 exon
chr19:48512308-48512494
Length
169 bp
Sequences
Splice sites
3' ss Seq
TCCCTCTCCCCATCCTGCAGGTG
3' ss Score
11.91
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCAGGCGGTGGTCTCCAGTCATCACCCCAACAGGCTCCAGGCAGTCAAGACCACCAACAGGGCTTCTTCCTCAGTGACAACCAGTCAG
Seq A exon
GTGCAGCCCCTTCCCTGAGCATCTCAGACGCATCTGGCCTCTGGCCTGAGTTGCTGCAGCAAGTGCCCCCCAGGCCAAATCAGAGCCCCCAAAACCCTCAGGGAGACTCAGACTGCTGGCCTCGGGAGCTAGGCTCCAGGCTAGAGCAGCTCCAGGCCCAGATGAACAG
Seq C2 exon
GCTGGAGTCCCGCATGTCTTCAGACCTCAGCCGCATCCTGAAGCTCCTTCAGCAGCCCCTTCCCCAGGACCACACTGGCTACATCTTGGGAGCCTCCACCTCTAACGACCTGGCCTTGTTCCCTGCAACCTCAGCAACTCAGAGTCCAGGAACTCGGCTGCCCCGGGGTGACCCACCCCCGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016613_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.746 C2=0.778
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTCTCCAGTCATCACCC
R:
CAGCCGAGTTCCTGGACTCT
Band lengths:
242-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development