MmuEX0025044 @ mm10
Exon Skipping
Gene
ENSMUSG00000001901 | Kcnh6
Description
potassium voltage-gated channel, subfamily H (eag-related), member 6 [Source:MGI Symbol;Acc:MGI:2684139]
Coordinates
chr11:106025794-106027737:+
Coord C1 exon
chr11:106025794-106025878
Coord A exon
chr11:106026716-106026872
Coord C2 exon
chr11:106027557-106027737
Length
157 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCTTCCTTCCTGAAGGTG
3' ss Score
10.23
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCAGATGGGGGTCTCCACTCAACACCCCGACAGGCCCCAGGCAACCAAGACCCCCAAGGCTTCTTCCTCAATGACAGCCAATCAG
Seq A exon
GTGCTGCCCCTTCCCTGAGCATTTCAGACACATCTGGGCTTTGGCCTGAATTGCTACAGCAAATGCCCCCAAGTCCCCCAAACCCACGAGAGAAGCTGGATTGCTGGCCTCGGGAGCTAGGCTTTAAGTTAGAACAGCTCCAAGCCCAGATGAACAG
Seq C2 exon
ACTGGAGTCCCGCGTGTCGTCAGACCTCAGCCGCATCCTACAGCTACTTCAGCATCCACAGGGCCACCCCGGCTACATCTTGGGGGCCCCTGCCTCCAGTGACCTGGCCTTGTTTCCTGAAACTTCAGTGACTCAGAGTTCAGAGTCGATGCTTCTGGTGGGACATCTGCCCTCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001901_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.730 A=0.434 C2=0.279
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGGGGGTCTCCACTCAA
R:
GATGTCCCACCAGAAGCATCG
Band lengths:
251-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types