RnoEX0046050 @ rn6
Exon Skipping
Gene
ENSRNOG00000008078 | Kcnh6
Description
potassium voltage-gated channel subfamily H member 6 [Source:RGD Symbol;Acc:620304]
Coordinates
chr10:94224981-94226657:+
Coord C1 exon
chr10:94224981-94225065
Coord A exon
chr10:94225637-94225793
Coord C2 exon
chr10:94226477-94226657
Length
157 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCTTCTTTCCTGAAGGTG
3' ss Score
9.99
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCAGATGGGGGTCTCCAGTCAACACCCCGACAGGCCCCAGGCCACCAAGACCCCCAAGGCTTCTTCCTCAATGACAGTCAGTCAG
Seq A exon
GTGCCGCCCCTTCCTTGAGCATTTCAGACACATCTGCACTTTGGCCTGAATTGCTACAGCAAATGCCCCCAAGTCCCCCAAACCCACGACAGGACCTGGATTGCTGGCCTCGGGAGCTAGGCTTTAAGTTAGAACAGCTCCAAGCCCAGATGAACAG
Seq C2 exon
ATTGGAGTCCCGTGTGTCATCAGACCTCAGCCGCATCCTACAGCTGCTTCAGCACCCGCAGGGTCGCCCCAGCTACATCTTGGGAGCCTCTGCCTCCAGTGACCTGGCCTCATTTCCTGAAACTTCAGTGACTCGGAGTTCAGAGTCTACACTTCTGGTGGGACATGTGCCCTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008078_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.878 A=0.453 C2=0.410
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000010816fB7189
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGGGGGTCTCCAGTCAA
R:
GCACATGTCCCACCAGAAGTG
Band lengths:
254-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]