DreEX6017185 @ danRer10
Exon Skipping
Gene
ENSDARG00000001803 | kcnh6a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 6a [Source:ZFIN;Acc:ZDB-GENE-040702-5]
Coordinates
chr3:31600573-31603541:-
Coord C1 exon
chr3:31603248-31603541
Coord A exon
chr3:31602379-31602562
Coord C2 exon
chr3:31600573-31600780
Length
184 bp
Sequences
Splice sites
3' ss Seq
CTATCTCCTCCTCCATCCAGCAG
3' ss Score
7.82
5' ss Seq
CAGGTCACT
5' ss Score
3.41
Exon sequences
Seq C1 exon
ATGGGATGGACCGGGATGGGATGGACACATACCCAGTCCAGCCCTGTTCTCCTGTGGGGAACCACCGGGGGGCGATACCGCTGTCACAGTGGGATGAGTTGTGTAGTGATGGCAGCCCTGCTTCTCTCTCCAGTGAAGAGGATATGAAGCCTCTGGTGTCCGGCCAGGGGGATATGTACTCACTGGGCACAGAGATGCAGGAATTCTCCCCTTCTGCAGTCAGTCTTATGCCCTCCGCCCACAGCACTGCTTCTGCCATGGCTGGACCGCTGACAGGTGCACATCAGTACACAG
Seq A exon
CAGCCCCTCTGAACATTTCAGGGGTATACAGCTATTTGTCGGACCGCAGGGCCAGTGAGTACTCAGAGAGTCAGAGACGTTCCTCTGCGGTGCAGGCATGCTATCACCATCACAGCCCCTGTGTGGGGGACAGACCGAATCAACTACAGGCCCGTCTGGAGCTGCTGCAGTCACAACTCAACAG
Seq C2 exon
ACTGGAGACCAGGATGACGGCTGATATAAATGTGATCCTGCAGCTGCTGCAGAGGCAGATGGCACCTGTTCCTCCAGCCTACAGTGCCGTTTCTCCTGATCCACTCGCACACCCAGCCCCCCCAGCCCACCCCACCAGCCTCTACACTACAGCAGCACACAACACCACACCCTCCCTACAGATCACTGACGCTTCTTCACCTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001803-'14-18,'14-16,15-18=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.768 A=0.613 C2=0.687
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGAATTCTCCCCTTCTGC
R:
TGTAGTGTAGAGGCTGGTGGG
Band lengths:
249-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]