GgaEX7010956 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr27:2693724-2695510:+
Coord C1 exon
chr27:2693724-2693816
Coord A exon
chr27:2694206-2694386
Coord C2 exon
chr27:2695312-2695510
Length
181 bp
Sequences
Splice sites
3' ss Seq
GGGGTCTCCTCTTCTTCCAGCCA
3' ss Score
7.24
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CACTCAGCCTCGTCACCGCCAGCGCCAGTGGCACAGAGGTCAGCAAGCAGGCGGCAGAGAGCAGCCAGTCCTATGCAGGTACCCACATCTGCA
Seq A exon
CCACCCCCCTGGACATCCCCAATATGTTCACCTTCTGGGAGGATCAAAGGCCAAACCATCACCCGGAGCCCCTACAGCATGTCTCCTTGGTGCACAGCTCACGGGACATCCCCCTGCACAGCGACTACAGACCAGGACAGATTGAGTCCAGGCTGGAGCTCCTGCAGGCCCAGCTCAGCAG
Seq C2 exon
GCTGGAGTCCAGGATGTCGTCAGACATTAATATAATCCTCCAGCTCCTGCAGCGCCAGCTGTCCCAAGTGCCGCCTGCATACAGCCCCATTTCACCATCCTCTCACAACCTGGCCATGTATGGCATCGTCCCACGGAGCCTGGAGCCTCTCACCCCCTGTGCACCCCTGGAGGATGAGCAGCAGACGGCCCCAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000505-'17-19,'17-18,18-19=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=0.590 C2=0.403
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGAGGTCAGCAAGCAGG
R:
TCTGCTGCTCATCCTCCAGG
Band lengths:
247-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]