RnoEX6012222 @ rn6
Exon Skipping
Gene
ENSRNOG00000009872 | Kcnh2
Description
potassium voltage-gated channel subfamily H member 2 [Source:RGD Symbol;Acc:621414]
Coordinates
chr4:7384624-7385577:+
Coord C1 exon
chr4:7384624-7384902
Coord A exon
chr4:7384999-7385185
Coord C2 exon
chr4:7385400-7385577
Length
187 bp
Sequences
Splice sites
3' ss Seq
CCATTCCTATCTGCCTCCAGGTG
3' ss Score
11.66
5' ss Seq
CAGGTGACA
5' ss Score
5.49
Exon sequences
Seq C1 exon
ACACAGAGCAGCCAGGGGAGGTGTCAGCCCTGGGGCAAGGCCCTGCCCGAGTTGGGCCAGGGCCGAGTTGCCGGGGACAGCCGGGAGGGCCATGGGGGGAGAGCCCATCCAGTGGCCCTTCCAGCCCAGAGAGCAGTGAGGATGAGGGCCCAGGTCGCAGCTCCAGCCCCCTCCGCCTGGTGCCCTTCTCCAGCCCCAGGCCTCCCGGAGACTCCCCAGGTGGGGAGCCTTTGACAGAGGATGGAGAGAAAAGCAGTGACACTTGTAATCCCCTGTCAG
Seq A exon
GTGCCTTCTCTGGGGTGTCCAATATTTTCAGCTTCTGGGGGGACAGTCGGGGGCGCCAGTACCAGGAGCTGCCTCGATGCCCTGCCCCGGCCCCTAGCCTCCTCAACATCCCCTTGTCTAGCCCTGGCCGGCGTTCCCGGGGTGACGTGGAGAGCAGGCTGGATGCACTCCAGAGACAGCTGAACAG
Seq C2 exon
GCTGGAAACCCGGCTAAGTGCAGACATGGCCACTGTCCTACAGCTGCTACAGAGGCAAATGACCCTGGTCCCTCCTGCCTACAGTGCTGTGACCACCCCTGGGCCTGGCCCCACTTCCACGTCCCCTTTGTTGCCTGTCGGCCCCGTCCCCACTCTCACCCTGGACTCGCTTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009872-'24-19,'24-18,25-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.704 C2=0.572
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAGAGCAGTGAGGATGA
R:
TCACAGCACTGTAGGCAGGAG
Band lengths:
247-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]