BtaEX0018815 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004078 | KCNH2
Description
potassium channel, voltage gated eag related subfamily H, member 2 [Source:HGNC Symbol;Acc:HGNC:6251]
Coordinates
chr4:114327051-114328084:-
Coord C1 exon
chr4:114327812-114328084
Coord A exon
chr4:114327536-114327722
Coord C2 exon
chr4:114327051-114327228
Length
187 bp
Sequences
Splice sites
3' ss Seq
ACCCTGCTCTCTGGCTGCAGGCG
3' ss Score
9.81
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
ACCCGGAGCAGCCAGGGGAGGTGTCGGCCTTGGGGCCGAGCCGGGCGGGGGCAGGGCCGAGTGGCCGGGGCCGGCAGGGGGGGCCGTGGGGGGAGAGCCTGTCCAGCGGCCCCTCCAGCCCCGAGAGCAGTGAGGATGAGGGCCCAGGCCGCAGCTCCAGCCCCCTCCGCCTGGTGCCCTTCTCCAGCCCCAGGCCCCCCGGAGAGCCGCCGGGTGGGGACCCCCTGACCGAGGATGGCGAGAAGAGCAGCGACACTTGTAACCCACTATCAG
Seq A exon
GCGCCTTCTCAGGAGTGTCCAACATCTTCAGCTTCTGGGGGGACAGCCGTGGCCGCCAGTACCAGGAGCTGCCTCGCTGTCCTGCCCCCGCCCCCAGCCTCCTCAACATCCCCCTTTCCAGCCCTGGCCGTCGGCCGCGGGGAGACGTGGAGACCAGGCTGGACGCCCTCCAGAGGCAGCTCAATAG
Seq C2 exon
GCTGGAGACCCGGCTGAGTGCAGACATGGCCACCGTCCTGCAGCTGCTGCAGAGACAGATGACGCTGGTCCCGCCAGCCTACAGTGCTGTGACCACCCCGGGGCCCGGCCCCGCCTCCACCTCCCCCCTGCTGCCCGCAGGCCCCATCCCCACCCTCACCCTGGACTCGCTTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004078-'20-20,'20-16,21-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.714 C2=0.642
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAGCAGTGAGGATGAGGG
R:
GTGGTCACAGCACTGTAGGC
Band lengths:
248-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development