DreEX0040876 @ danRer10
Exon Skipping
Gene
ENSDARG00000029881 | kcnh2a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 2a [Source:ZFIN;Acc:ZDB-GENE-070912-699]
Coordinates
chr2:24506038-24509309:+
Coord C1 exon
chr2:24506038-24506289
Coord A exon
chr2:24508439-24508637
Coord C2 exon
chr2:24509117-24509309
Length
199 bp
Sequences
Splice sites
3' ss Seq
ATTACCTCATTTTACATCAGGAG
3' ss Score
5.32
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
ATACAGAGAGAACAGAAGACAGGCTCAACAGGATGACTTTCAGAACACAGACTTCAGGAAAACAGCATGAGAACAGACAAACTGCTCATCGCAGCTCAGACATCTTTGCCTCACAGTCAAGCAGCGATGAAGAGGAAGAGACTCAACGACCCTCTGTGATGGTGGACTGCTCTCAGAGCCATATCAATAGCGTTAGCAATGCTAACAGGGACAAGGACCACAACAGCAGTAACTCGTTCAACGCACTCTCAG
Seq A exon
GAGCTTTTTCAGGGGTTTCTAACATCTTTAGCCTTTGGGGAGACAGCAGCCGTGGCCATCACTACCAGGAAGTACCCAGCCACAGCATGTCCTTCCCCTCATCTTCAGTTCCCTCTAACACCGTCCTGCACAATGTCACCTATGGGCAATGCTCAGAGGTAGAGAACAGACTGGAAATGATGCACAGGCAGCTCTACCG
Seq C2 exon
ATTGGAGAAGCGCATGTCAAAGGACATTGGAGCCATAATGCAGTTGCTTCAGAGGCAAATGGTGCAGGTTCCACCAGCCTACAGCTCAGTGACGTCTCCTACAGAAGCATCGCCAATTCCACCCAAACCTGGACAGAAATTGGTTCAGCCTGTGAATCCTTTAGAAACAGAGACTCCATCTATCCTGTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029881-'15-16,'15-14,16-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.965 A=0.351 C2=0.556
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGACCCTCTGTGATGGTG
R:
TCTGTCCAGGTTTGGGTGGAA
Band lengths:
246-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]