MmuEX6016294 @ mm10
Exon Skipping
Gene
ENSMUSG00000038319 | Kcnh2
Description
potassium voltage-gated channel, subfamily H (eag-related), member 2 [Source:MGI Symbol;Acc:MGI:1341722]
Coordinates
chr5:24321245-24322221:-
Coord C1 exon
chr5:24321946-24322221
Coord A exon
chr5:24321636-24321822
Coord C2 exon
chr5:24321245-24321422
Length
187 bp
Sequences
Splice sites
3' ss Seq
CCACTCCTCTCTGGCTCCAGGTG
3' ss Score
10.28
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
ACACAGAGCAGCCAGGGGAGGTGTCAGCCCTGGGGCAAGGCCCTGCCCGAGTTGGGCCAGGGCCGAGTTGCCGGGGACAGCCGGGAGGGCCATGGGGGGAGAGCCCATCCAGCGGCCCTTCCAGCCCAGAGAGCAGTGAAGATGAGGGCCCTGGTCGCAGCTCCAGTCCCCTCCGCCTGGTGCCCTTCTCCAGCCCCAGGCCTCCGGGAGACCCCCCAGGTGGGGAGCCTTTGACAGAGGATGGGGAGAAAAGTGACACCTGTAATCCCTTGTCAG
Seq A exon
GTGCCTTCTCTGGGGTGTCCAATATTTTCAGCTTCTGGGGGGACAGTCGGGGGCGCCAGTACCAGGAGTTGCCTCGATGCCCTGCCCCTGCCCCCAGCCTCCTCAACATCCCCTTGTCTAGCCCTGGTCGGCGATCCCGGGGTGATGTGGAGAGCAGGCTGGACGCACTCCAGAGACAGCTGAACAG
Seq C2 exon
GCTGGAAACCCGGCTAAGTGCAGACATGGCCACTGTCCTACAGCTGCTACAGAGGCAAATGACCCTGGTCCCTCCTGCCTACAGTGCTGTGACCACCCCTGGGCCCGGCCCCACTTCCGCATCCCCTTTGTTGCCTGTCGGCCCTGTCCCCACTCTCACCCTGGACTCGCTTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038319-'45-30,'45-28,46-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.714 C2=0.583
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAGAGAGCAGTGAAGAT
R:
TCACAGCACTGTAGGCAGGAG
Band lengths:
246-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types