GgaEX1031288 @ galGal4
Exon Skipping
Gene
ENSGALG00000027043 | KCNH2
Description
potassium channel, voltage gated eag related subfamily H, member 2 [Source:HGNC Symbol;Acc:HGNC:6251]
Coordinates
chr2:334495-335910:+
Coord C1 exon
chr2:334495-334773
Coord A exon
chr2:335385-335571
Coord C2 exon
chr2:335719-335910
Length
187 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTCCCTCTCCCCCAGGAG
3' ss Score
12.95
5' ss Seq
TAGGTACCT
5' ss Score
4.67
Exon sequences
Seq C1 exon
ATGCGGAGGCCACCGGGGAGCCACGTGGTGGGCAGAAGGCGCTGCGGCTGAGCAGGGGCTGCCAGGCACCGGGAGCCCCACGGGGGCTGGCAGAGTGGGAGCCGTGCCACTGCAGCTCGCCCTCCAGCTCCCCATCCAGCGATGAGGATGAGCACCCCGTGCCCACCCCGGGGGCTGCCGCTCTCTCACCCTTCCGCAGCCCCCGGCCCGGCGGTGAAGCCCCCGCAGCCACCGACACTGAGGAGCGCGAGGGCAGCGATATGTGCAACCCCCTCTCAG
Seq A exon
GAGCCTTCTCGGGGGTCTCCAACATCTTCAGCTTCTGGGGGGAGAGCCGGGGGAGGCAGTACCAGGAGCTGCCCCGCTGCACCATCCCTGCACACGCAGCCCTTGGGATCCCAATACCCTCCATGAGCCGCCGGCAGCGCTCTGAGGTGGAGATGCGCCTCGACCTCCTCCAGAAGCAGCTCAATAG
Seq C2 exon
GTTGGAGACGCGGATGGCGGCGGACATCAGCTCCATCATGCAGCTGCTGCAGCGCCAGGCTGCTCTCGTGCCCCCTGCCTACAGCACGGTGTCATCCCCCCATCAGCCTCCGGGTCCCCCCCCCTGCCCTCTGCAACCCATCCTCCCCATCACCCCCATCCAGCCGCTCTCTCAGGTGAGCACCCCCAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027043-'8-17,'8-16,9-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.894 A=0.429 C2=0.523
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGCGATGAGGATGAGCA
R:
GATGACACCGTGCTGTAGGC
Band lengths:
242-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]