BtaEX0018912 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003449 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr4:93655791-93658460:-
Coord C1 exon
chr4:93658288-93658460
Coord A exon
chr4:93658093-93658204
Coord C2 exon
chr4:93655791-93656097
Length
112 bp
Sequences
Splice sites
3' ss Seq
ACCCTGCCTCCCACCTGCAGCGT
3' ss Score
11.52
5' ss Seq
ACGGTCAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GACGAGGCCCCCGCCCTGAGTCCCGGCAGCTGCTGTCCTCGCTGCCTGCCCCGGCCCGCTTCCTGCATGGCCTTCGGAGACCCTCATTACCGCACCTTCGACGGCCGCCTGCTGCACTTCCAGGGCAGCTGTAGCTACGTGCTGGCCAAGGACTGCCGTGGCGGGGACTTCAG
Seq A exon
CGTGCACGTGACCAACGATGACCGGGGCCGGAGCGGCGTGTCCTGGACCCAGGAAGTGGCTGTGCTGCTGGGAGACGTGGCCGTGCGGCTGCTGCAGGACAGGGCGGTCACG
Seq C2 exon
GTCCCAGAGGGCCCAGGACCTGGTCGGCCCTGTTCCAAGGGCCGTGAGGTGGATCCATGCCAGGCAGCAGGGTACCGTGCCAGGCGTGAGGCCAACGCCCGGTGTGCGGTGCTGAAGTCCGCCCCGTTCAGCCGCTGCCATGCTGTGGTGCCACCAGACCCCTTCTTTGCCGCCTGCGTGTATGACCTCTGTGCTTGCGGGCCCGGTTCCTCCTCTGACGCCTGCCTCTGTGACGCCCTGGAAGCCTATGCTAGCCACTGTCGCCAGGCAGGGGTGACACCAGCCTGGCGGGGCCCCACACTCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003449_MULTIEX1-22/25=21-C2
Average complexity
C2
Mappability confidence:
96%=96=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(24.1=24.1),PF0009420=VWD=PU(24.0=62.1)
A:
PF0009420=VWD=FE(24.7=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCCAGGGCAGCTGTAG
R:
CACAGAGGTCATACACGCAGG
Band lengths:
252-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development