HsaEX1018480 @ hg38
Exon Skipping
Gene
ENSG00000135253 | KCP
Description
kielin/chordin-like protein [Source:HGNC Symbol;Acc:HGNC:17585]
Coordinates
chr7:128879522-128880085:-
Coord C1 exon
chr7:128879913-128880085
Coord A exon
chr7:128879718-128879829
Coord C2 exon
chr7:128879522-128879623
Length
112 bp
Sequences
Splice sites
3' ss Seq
TGGGACTTTCCTGCCCACAGTGT
3' ss Score
8.24
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
GACAAGGCCCCTGCCCTGAGTCCTGGCAGCTGCTGCCCCCGCTGCCTGCCTCGGCCCGCTTCCTGCATGGCCTTCGGAGACCCCCATTACCGCACCTTCGACGGCCGCCTGCTGCACTTCCAGGGCAGTTGCAGCTATGTGCTGGCCAAGGACTGCCACAGCGGGGACTTCAG
Seq A exon
TGTGCACGTGACCAATGATGACCGGGGCCGGAGCGGTGTGGCCTGGACCCAGGAGGTGGCGGTGCTGCTGGGAGACATGGCCGTGCGGCTGCTGCAGGACGGGGCAGTCACG
Seq C2 exon
GTGGATGGGCACCCGGTGGCCTTGCCCTTCCTGCAGGAGCCGCTGCTGTATGTGGAGCTGCGAGGACACACTGTGATCCTGCACGCCCAGCCCGGGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135253_MULTIEX4-6/6=5-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(24.1=24.1),PF0009420=VWD=PU(24.0=62.1)
A:
PF0009420=VWD=FE(24.7=100)
C2:
PF0009420=VWD=PD(33.9=73.1)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGTCCTGGCAGCTGCT
R:
GTGCAGGATCACAGTGTGTCC
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains