BtaEX0019230 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004023 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr4:33649103-33672018:+
Coord C1 exon
chr4:33649103-33649223
Coord A exon
chr4:33654539-33654649
Coord C2 exon
chr4:33671823-33672018
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTCTGCTGGCTCCAGGCT
3' ss Score
7.1
5' ss Seq
CAGGTAGCG
5' ss Score
7.38
Exon sequences
Seq C1 exon
AAAGATTACCACTTTGAATATACAGAATGTGATAGCAGTGGCTCCAGGTGGAGAGTTGCCATTCCGAATTCCGCAGTGGACTGCTCTGGCCTGCCTGACCCAGTGAGAGGCAAAGAATGCA
Seq A exon
GCTTAGCTTCAGAGAACTTTGCTGCTGTTTCCAAGCCCTGGTGCCGAGTCTCATGTCTGTGGACATCATCCACCATTGGAGGTGTTGGTGTCATTCAGACACAGCTTACAG
Seq C2 exon
CTTTCTCCTGTGCTTCTGGGGAGTATCTAGAAATGAAGAACCAGGTATGCAGTAAGTGTGGTGAAGGCACCTACTCCTTGGGCAGTGGCATCAAATTTGACGAATGGGATGAATTGCCGGCTGGATTTTCCAACGTCGCAACATTCATGGACACTGTGGTCGGCCCTTCTGATAGCAGGCCAGAGGGCTGTAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004023_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000005255fB3632
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGGAGAGTTGCCATTCC
R:
TATCAGAAGGGCCGACCACAG
Band lengths:
251-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development