BtaEX0019227 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004023 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr4:33518953-33672018:+
Coord C1 exon
chr4:33518953-33519266
Coord A exon
chr4:33649103-33649223
Coord C2 exon
chr4:33671823-33672018
Length
121 bp
Sequences
Splice sites
3' ss Seq
GTCTTTGTGATTATTTGCAGAAA
3' ss Score
8.81
5' ss Seq
GCAGTATGT
5' ss Score
5.57
Exon sequences
Seq C1 exon
ACAGCGGAGCTGTCAGCTGTGAGCTGAGCGCGCAGCCCTAGCGGCCCGGTAGCAGAACGCGCCCCACCCCGGGAGGCTGCTTTCCAGCCGGCCGGCGGGCCGACCGCAGCGGGAAGGAGATGCTGTTCCTCCGCCCGGGGCCGGCGCGGGGGAGGGGCCGGGGGCGGCCGGCCAGGGCTCCCCACAGCGGACTCTCGCCGCCCTGGAGCCCCGCCTGGATCTGCTGCTGGGCACTCGCCGGCTGCCAGGCGGCCTGGGCTGGGGCTGGGGACTTGCCCTCCACCTCCGGCCGCCCGCTTCCTCCTTGCCTGGAG
Seq A exon
AAAGATTACCACTTTGAATATACAGAATGTGATAGCAGTGGCTCCAGGTGGAGAGTTGCCATTCCGAATTCCGCAGTGGACTGCTCTGGCCTGCCTGACCCAGTGAGAGGCAAAGAATGCA
Seq C2 exon
CTTTCTCCTGTGCTTCTGGGGAGTATCTAGAAATGAAGAACCAGGTATGCAGTAAGTGTGGTGAAGGCACCTACTCCTTGGGCAGTGGCATCAAATTTGACGAATGGGATGAATTGCCGGCTGGATTTTCCAACGTCGCAACATTCATGGACACTGTGGTCGGCCCTTCTGATAGCAGGCCAGAGGGCTGTAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004023-'0-5,'0-3,6-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGCTGCTGGGCACTC
R:
TGTCCATGAATGTTGCGACGT
Band lengths:
250-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development