DreEX0067779 @ danRer10
Exon Skipping
Gene
ENSDARG00000042213 | si:ch211-233h19.2
Description
si:ch211-233h19.2 [Source:ZFIN;Acc:ZDB-GENE-061009-14]
Coordinates
chr18:8959747-8967315:+
Coord C1 exon
chr18:8959747-8959887
Coord A exon
chr18:8964340-8964460
Coord C2 exon
chr18:8967126-8967315
Length
121 bp
Sequences
Splice sites
3' ss Seq
TGCATTGCTTGTTTTTGCAGACG
3' ss Score
9.11
5' ss Seq
GCAGTAGGT
5' ss Score
4.53
Exon sequences
Seq C1 exon
CGGCAAGCAATGGAGCGCACGAGGAGCATCATCGTCCGCCACAGAGAGCGTTTTATACGTAATTGTTTAGGATGGATATTTTGGGTTTTCATCCTGAACGCGTTCGTGGCGTCTTCGGTTAACCTGCGTCAGTGTAAAGAG
Seq A exon
ACGGACTACTACTTTCAGTACACCGAGTGTGACAGCACTGGCTCCAGGTGGAGGGTGGCCATTCCTCTCAATCCAGGAGAATGTACAGGATTACCAGACCCTGTGAAGGGCACCGACTGCA
Seq C2 exon
CATTCTCCTGCAAGGCGGGGGAGTTTCTGGAGATGTCTGCTCAGGAGTGCACTCAGTGTGCTGCTGGCACTTATTCTCTGGGCAGCGGCCTACGCTTTGATGAGTGGGATGACATTCCTTCTGGATTCAGCAGTCTAGCCACCAACCCTGATAACTCAGCCAATGAAGACAACTCAACCTCCTGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042213-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCACAGAGAGCGTTTTAT
R:
ATCAGGGTTGGTGGCTAGACT
Band lengths:
258-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]