HsaEX0034027 @ hg19
Exon Skipping
Gene
ENSG00000164659 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:21945]
Coordinates
chr7:86577043-86689015:-
Coord C1 exon
chr7:86688641-86689015
Coord A exon
chr7:86594220-86594340
Coord C2 exon
chr7:86577043-86577238
Length
121 bp
Sequences
Splice sites
3' ss Seq
GTTTTTGTGATTGTTTGCAGAAA
3' ss Score
8.58
5' ss Seq
GCAGTATGT
5' ss Score
5.57
Exon sequences
Seq C1 exon
CGTGACGGGAGCATCGGCGCTGGCTGCCCGGGCCGCGAGCGCAGCAGAGCTGTCAGCGGGCGGACGGGCAGCGGGTGACGGAGCGGCGAGACGAGCGCACAGCAGTCGCGGCCCGGGAGCCGGAGCTGCCGCCGCACCCCGGGAAGGCTGCCTTGCCGCCGGCCCGCCGACCGCGGCCGGACGAAGATGCTGTTCCGCGCCCGGGGGCCGGTACGGGGCAGGGGCTGGGGGCGGCCGGCGGAGGCTCCCCGCCGCGGGCGCTCGCCGCCCTGGAGCCCCGCCTGGATTTGCTGCTGGGCGCTCGCCGGCTGCCAGGCGGCCTGGGCTGGGGACCTGCCCTCCTCCTCCAGCCGCCCGCTTCCTCCTTGCCAGGAG
Seq A exon
AAAGATTATCACTTTGAATATACGGAATGTGATAGCAGTGGCTCCAGGTGGAGAGTTGCCATTCCAAATTCTGCAGTGGACTGCTCTGGCCTGCCTGACCCAGTGAGAGGCAAAGAATGCA
Seq C2 exon
CTTTCTCCTGTGCTTCTGGAGAGTATCTAGAAATGAAGAACCAGGTATGCAGTAAGTGTGGTGAAGGCACCTATTCCTTGGGCAGTGGCATCAAATTTGATGAATGGGATGAATTGCCGGCAGGATTTTCTAACATCGCAACATTCATGGACACTGTGGTGGGCCCTTCTGACAGCAGGCCAGACGGCTGTAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164659_MULTIEX2-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.206 A=0.000 C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGATTTGCTGCTGGGC
R:
CCCACCACAGTGTCCATGAAT
Band lengths:
258-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)