Special

MmuEX0002351 @ mm9

Exon Skipping

Gene
ENSMUSG00000056004 | 9330182L06Rik
Description
RIKEN cDNA 9330182L06 gene [Source:MGI Symbol;Acc:MGI:2443264]
Coordinates
chr5:9266118-9399376:+
Coord C1 exon
chr5:9266118-9266456
Coord A exon
chr5:9380278-9380398
Coord C2 exon
chr5:9399181-9399376
Length
121 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGTGATTGTTTGCAGAAA
3' ss Score
8.57
5' ss Seq
GCAGTATGT
5' ss Score
5.57
Exon sequences
Seq C1 exon
CTCTGGCGTGACGGGAGCTCGGGCGCCGGCTGCCCGCGCTGCGAGCGGCCGAGCTGTAAGCGTGCAGATCAGCCCAGTTGAGCTGAGCCCAGAGGAGGCAAGAGCACGGTCCTCGCTTCCCAGACTCCTCGCCGGAGTCCATTCAGTGCCGGGATGCTGCTGCTCACCCTGCGGCGGGCGAAAGGCAGGGATCGGGGGCGACCGGCCGGGGGTCCCCGCCGCGCGCTCTCGCTGCCCTGGAGCCCCGCCTGGATTTGCTGCTGGGCGCTCGCAGGCTGCCAGGCAGTTTGGGCTGGAGACTCGTCCTCCTCTGGCCGCCCGCTTCCTGCGTGCCAAGAG
Seq A exon
AAAGATTACCACTTTGAATATACAGAATGTGATAGCACTGGCTCCAGGTGGAGGGTCGCCATTCCGAATTCTGCAGTGGATTGCTCTGGCCTGCCTGACCCAGTGAAAGGCAAAGAATGCA
Seq C2 exon
CTTTCTCCTGTGCTTCTGGAGAGTATCTAGAAATGAAGAACCAGGTATGCAGTAAATGTGTGGAAGGCACCTACTCCTTGGGCAGTGGCATCAAATTTGATGAATGGGATGAATTGCCGGCAGGATTTTCCAACGTTGCAACATTCATGGACACTGTGGTGGGCCCTTCTGACAGCAGGCCAGATGGCTGTAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056004-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.156 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000069165





     
                   









    
Main Skipping Isoform:
ENSMUSP00000116440





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000069165f4977A, ENSMUSP00000111005, ENSMUSP00000116026, ENSMUSP00000120849, ENSMUSP00000121757
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr7:86964904-86965024 
ALTERNATIVE
HsaEX0034027
(KIAA1324L)
Human
(hg19)
chr7:86594220-86594340 
ALTERNATIVE
HsaEX0034027
(KIAA1324L)
Rat
(rn6)
chr4:21668441-21668561 
Cow
(bosTau6)
chr4:33649103-33649223 
ALTERNATIVE
BtaEX0019227
(KIAA1324L)
Chicken
(galGal4)
chr1:7470536-7470656 
HIGH PSI
GgaEX1031824
(KIAA1324L)
Chicken
(galGal3)
chr1:8065115-8065235 
Zebrafish
(danRer10)
chr18:8964340-8964460 
HIGH PSI
DreEX0067779
(si:ch211-233h19.2)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GCAGTTTGGGCTGGAGACTC

				
R: 
CATCTGGCCTGCTGTCAGAAG

				
Band lengths: 
243-364

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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