BtaEX0019301 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018061 | KIAA1715
Description
Bos taurus KIAA1715 (KIAA1715), mRNA. [Source:RefSeq mRNA;Acc:NM_001075989]
Coordinates
chr2:20941574-20946981:+
Coord C1 exon
chr2:20941574-20941700
Coord A exon
chr2:20944674-20944701
Coord C2 exon
chr2:20946893-20946981
Length
28 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTTATTGAACTATAGATG
3' ss Score
7
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GGAGTTGGCCGGGCCCATATCTCTGTCACTGGCTGGTGCTGTCCGCTCTGGAGGCGGACTGCGGGGTGGTGGCTGAAACTGGCAGAGGTGGACGCCAGCGCCGGGCTTTGCCCGTTTCTACTTGAAG
Seq A exon
ATGATTTACAATATCATATAAATTGCAG
Seq C2 exon
CTGTGAATTCCTTTGGACAACTGATGATATTTATTATTGTGCCCAGTTTTTACAAATGAAAAATGGGTGGATTATTTTCTCGATGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018061_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTGCCCGTTTCTACTTG
R:
CCTCCATCGAGAAAATAATCCACCC
Band lengths:
113-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development