BtaEX6008938 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018061 | KIAA1715
Description
Bos taurus KIAA1715 (KIAA1715), mRNA. [Source:RefSeq mRNA;Acc:NM_001075989]
Coordinates
chr2:20941574-20948614:+
Coord C1 exon
chr2:20941574-20941700
Coord A exon
chr2:20946893-20946981
Coord C2 exon
chr2:20948573-20948614
Length
89 bp
Sequences
Splice sites
3' ss Seq
AATAATTTCTTTATTTCTAGCTG
3' ss Score
7.58
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GGAGTTGGCCGGGCCCATATCTCTGTCACTGGCTGGTGCTGTCCGCTCTGGAGGCGGACTGCGGGGTGGTGGCTGAAACTGGCAGAGGTGGACGCCAGCGCCGGGCTTTGCCCGTTTCTACTTGAAG
Seq A exon
CTGTGAATTCCTTTGGACAACTGATGATATTTATTATTGTGCCCAGTTTTTACAAATGAAAAATGGGTGGATTATTTTCTCGATGGAGG
Seq C2 exon
ACGAAACCTTCAACTGTAGAGGTTCTGGAAAATATAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018061-'2-3,'2-1,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCGGGCCCATATCTCT
R:
TCTATATTTTCCAGAACCTCTACAGT
Band lengths:
159-248
Functional annotations
There are 1 annotated functions for this event
PMID: 20213681
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: detection by mass spectrometry. ELM ID: ELMI002336; ELM sequence: MGGLFSR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]