GgaEX1031920 @ galGal4
Exon Skipping
Gene
ENSGALG00000009283 | KIAA1715
Description
KIAA1715 [Source:HGNC Symbol;Acc:HGNC:21610]
Coordinates
chr7:15868345-15873821:+
Coord C1 exon
chr7:15868345-15869031
Coord A exon
chr7:15872556-15872637
Coord C2 exon
chr7:15873777-15873821
Length
82 bp
Sequences
Splice sites
3' ss Seq
GCTTAATGCTTTACTTCTAGCTG
3' ss Score
5.95
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CTTTTGTCCCAGCAGCCCCCATATTGCCGTGTTTGGGGATTTTTTTTGGCTACAAAAGCATTGATAGCACGGGAAAACACCACGGGCCGAGCTATGCTGCACGGTTAGATGGCAGGAGTCAGTTAGACTGCAGGAGTCAGCTGAACGTGCGCGGCTCATGCATACGAATTTCCACCCCGAAGGAACTACCACCTTGCTTTCGCAGCTCTGCACAGCCGCAGCCGTGAAACGTCTAAGCGGGGGAGCTGAGGAGTCGCGACTGCACGCACAGCAGCGCTCTGCGCTCCTCCGTCTCCTCCGCACGGGCTGCGCCAGCCCAGAAAGCGCAGAACGAAACCTCCACACGGTGCCCGCTCCCCTCCCCCGCCTCAGCGCGCCCCGCGGCGGCGCGACGCTGATTGGCTGCCGGGACCGCGCGGGGGCTGATGGGATTGCCGCCGGGGCGGCCCGGCCCCTCCTTCGGCGGGCGGCGGCGGGATGCGTGGCCCGGCGCGCGGCAG
Seq A exon
CTGTGAATTCTTGTAGAAGATTAATAGCTCTACCTACATTTGTCCACTGTAGAAGATGGGTGGATTAATTTCAAGATGGAGG
Seq C2 exon
CAGGCAAAGCCTTCTACTGTAGAAGTATTAGAAAAAATTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009283_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 1 annotated functions for this event
PMID: 20213681
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: detection by mass spectrometry. ELM ID: ELMI002336; ELM sequence: MGGLFSR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]