GgaALTA0004881-1/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009283 | KIAA1715
Description
KIAA1715 [Source:HGNC Symbol;Acc:HGNC:21610]
Coordinates
chr7:15872556-15873821:+
Coord C1 exon
chr7:15872556-15872637
Coord A exon
NA
Coord C2 exon
chr7:15873780-15873821
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
GTTCTTTCCCTTGTAAGCAGGCA
3' ss Score
5.27
Exon sequences
Seq C1 exon
CTGTGAATTCTTGTAGAAGATTAATAGCTCTACCTACATTTGTCCACTGTAGAAGATGGGTGGATTAATTTCAAGATGGAGG
Seq A exon
NA
Seq C2 exon
GCAAAGCCTTCTACTGTAGAAGTATTAGAAAAAATTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009283-6-3,6-2,6-1-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]