RnoEX0050292 @ rn6
Exon Skipping
Gene
ENSRNOG00000001593 | Lnpk
Description
lunapark, ER junction formation factor [Source:RGD Symbol;Acc:1312042]
Coordinates
chr3:61486113-61494241:-
Coord C1 exon
chr3:61494141-61494241
Coord A exon
chr3:61488670-61488758
Coord C2 exon
chr3:61486113-61486154
Length
89 bp
Sequences
Splice sites
3' ss Seq
AATATTTTACTTTGTTTTAGCTG
3' ss Score
8.29
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
TGTATCAGTGGGTGCTGCTGCCTGCTGCATAAGCTCTACGCGGTGGCGACTCAGGCTTCCCCGAGTGGACGCCGGGGCCAAGCGGCGCCCGCTTTCCTCAG
Seq A exon
CTGTGACTTCTTTTGGACAACTCATGATATTTATTATTGTGCCAAGTTTCTACAGATAAAAGATGGGTGGATTATTTTCTCGATGGAGG
Seq C2 exon
GCAAAACCTTCAACAGTAGAAGTTCTAGAAAATATAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001593-'1-4,'1-0,7-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF136871=DUF4153=PU(8.9=64.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTATCAGTGGGTGCTGCTG
R:
AGAACTTCTACTGTTGAAGGTTTTGC
Band lengths:
127-216
Functional annotations
There are 1 annotated functions for this event
PMID: 20213681
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: detection by mass spectrometry. ELM ID: ELMI002336; ELM sequence: MGGLFSR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]