MmuEX0026642 @ mm10
Exon Skipping
Gene
ENSMUSG00000009207 | Lnpk
Description
lunapark, ER junction formation factor [Source:MGI Symbol;Acc:MGI:1918115]
Coordinates
chr2:74570935-74578948:-
Coord C1 exon
chr2:74578819-74578948
Coord A exon
chr2:74573538-74573626
Coord C2 exon
chr2:74570935-74570976
Length
89 bp
Sequences
Splice sites
3' ss Seq
ATATTTTACTTTGTTTCTAGCTG
3' ss Score
7.93
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GATGGGAAGGCATTGGCCGGGCCCAGCGCTCTATCTGTAGGTGCTGCTGCCTGCTCCAGAGGCTCTACGCGGTGGCGACCCAGGCTTCCCCGAGTGGACGCCCAGGCCGAGCGGCGCCCGCTTTTCTCAG
Seq A exon
CTGTGACTTCTTTTGGACAACTCATGATATTTATTATTGTGCCAAGTTTCTGCAAATAAAAGATGGGTGGATTATTTTCTCGATGGAGG
Seq C2 exon
GCAAAACCTTCAACAGTAGAAGTTCTAGAAAATATAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009207-'1-11,'1-8,10-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF136871=DUF4153=PU(8.7=64.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCAGCGCTCTATCTGTAG
R:
TTTTCTAGAACTTCTACTGTTGAAGG
Band lengths:
143-232
Functional annotations
There are 1 annotated functions for this event
PMID: 20213681
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: detection by mass spectrometry. ELM ID: ELMI002336; ELM sequence: MGGLFSR; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types