BtaEX0019688 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012029 | KLRB1
Description
killer cell lectin-like receptor subfamily B, member 1 [Source:HGNC Symbol;Acc:HGNC:6373]
Coordinates
chr5:100954020-100955259:+
Coord C1 exon
chr5:100954020-100954118
Coord A exon
chr5:100954569-100954675
Coord C2 exon
chr5:100955185-100955259
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTTTGGCCCCAAGGCA
3' ss Score
6.3
5' ss Seq
TAGGTGCCT
5' ss Score
1.26
Exon sequences
Seq C1 exon
ATCTTTGTCAGGGTCCACGTTGGCATAACTTTCCCCTGAAATTTAGTTGTGCTGTGATTATACTTCTTGCCTTGACTGTGACTGGGTTGAGTGTTTCAG
Seq A exon
GCATATGGGATCTCAGCTCCCCCACCAGGGATCGAACCAGCATCCTCTGCATTGGAAGGTGAAGTCTTAACCACTGGACTTCCTGGGACATCCCTACAGTTTCTTAG
Seq C2 exon
TGATATTCATAAGACAAAACACATCAGTAGAAAAAACCAGCATGGATGCTCAAGAGAACAGGAAGGAAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012029-'1-2,'1-1,2-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.288
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000015955fB3724
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGTCAGGGTCCACGTTGG
R:
TGTTGCTTCCTTCCTGTTCTCT
Band lengths:
171-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development