BtaEX0019690 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012029 | KLRB1
Description
killer cell lectin-like receptor subfamily B, member 1 [Source:HGNC Symbol;Acc:HGNC:6373]
Coordinates
chr5:100949064-100955259:+
Coord C1 exon
chr5:100949064-100949148
Coord A exon
chr5:100954020-100954118
Coord C2 exon
chr5:100955185-100955259
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTCTTAATGTCTCAGATC
3' ss Score
9.08
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATGGAGAGTCAGCTGGTATATGCTGATTTAAACTTACCCAGGGATTCTGGCATTGAAAGGTCATCACCCCCATCTCTTCTTCAGA
Seq A exon
ATCTTTGTCAGGGTCCACGTTGGCATAACTTTCCCCTGAAATTTAGTTGTGCTGTGATTATACTTCTTGCCTTGACTGTGACTGGGTTGAGTGTTTCAG
Seq C2 exon
TGATATTCATAAGACAAAACACATCAGTAGAAAAAACCAGCATGGATGCTCAAGAGAACAGGAAGGAAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012029_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.288
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGTCAGCTGGTATATGCT
R:
CTGTTGCTTCCTTCCTGTTCTCT
Band lengths:
159-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development