HsaEX6065119 @ hg38
Exon Skipping
Gene
ENSG00000111796 | KLRB1
Description
killer cell lectin like receptor B1 [Source:HGNC Symbol;Acc:HGNC:6373]
Coordinates
chr12:9599767-9607886:-
Coord C1 exon
chr12:9607755-9607886
Coord A exon
chr12:9601501-9601599
Coord C2 exon
chr12:9599767-9599841
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTTAACTTTTCAGATG
3' ss Score
11.5
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAGTTTGTTCTTACACACAAGTTTAATGCCACCTTCCTCTGTCTGCCATGGACCAACAAGCAATATATGCTGAGTTAAACTTACCCACAGACTCAGGCCCAGAAAGTTCTTCACCTTCATCTCTTCCTCGGG
Seq A exon
ATGTCTGTCAGGGTTCACCTTGGCATCAATTTGCCCTGAAACTTAGCTGTGCTGGGATTATTCTCCTTGTCTTGGTTGTTACTGGGTTGAGTGTTTCAG
Seq C2 exon
TGACATCCTTAATACAGAAATCATCAATAGAAAAATGCAGTGTGGACATTCAACAGAGCAGGAATAAAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111796-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.437 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCACCTTCCTCTGTCTG
R:
CCTGCTCTGTTGAATGTCCACA
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains