HsaEX6065119 @ hg19
Exon Skipping
Gene
ENSG00000111796 | KLRB1
Description
killer cell lectin-like receptor subfamily B, member 1 [Source:HGNC Symbol;Acc:6373]
Coordinates
chr12:9752363-9760482:-
Coord C1 exon
chr12:9760351-9760482
Coord A exon
chr12:9754097-9754195
Coord C2 exon
chr12:9752363-9752437
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTTAACTTTTCAGATG
3' ss Score
11.5
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GAGTTTGTTCTTACACACAAGTTTAATGCCACCTTCCTCTGTCTGCCATGGACCAACAAGCAATATATGCTGAGTTAAACTTACCCACAGACTCAGGCCCAGAAAGTTCTTCACCTTCATCTCTTCCTCGGG
Seq A exon
ATGTCTGTCAGGGTTCACCTTGGCATCAATTTGCCCTGAAACTTAGCTGTGCTGGGATTATTCTCCTTGTCTTGGTTGTTACTGGGTTGAGTGTTTCAG
Seq C2 exon
TGACATCCTTAATACAGAAATCATCAATAGAAAAATGCAGTGTGGACATTCAACAGAGCAGGAATAAAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111796-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.379 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCCACCTTCCTCTGTCTG
R:
CCTGCTCTGTTGAATGTCCACA
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)