MmuEX6007331 @ mm9
Exon Skipping
Gene
ENSMUSG00000079298 | Klrb1b
Description
killer cell lectin-like receptor subfamily B member 1B [Source:MGI Symbol;Acc:MGI:107539]
Coordinates
chr6:128770283-128776333:-
Coord C1 exon
chr6:128776177-128776333
Coord A exon
chr6:128770960-128771058
Coord C2 exon
chr6:128770283-128770354
Length
99 bp
Sequences
Splice sites
3' ss Seq
TATCGTCTTTAACTTCTCAGACA
3' ss Score
7.54
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TCATTTCACCTCACAGGACTCAAAGTTTGTCCCTGTTCACGAGGCCGGTGTCAAGTCCCTCCATCTACAATGGATTCAACAACACTGGTCTATGCAGATTTAAACCTAGCCAGGATCCAAGAACCTAAGCATGATTCACCTCCATCTCTTTCCCCAG
Seq A exon
ACACCTGTCGGTGCCCTCGCTGGCATCGGTTGGCTCTGAAATTTGGCTGTGCTGGCCTCATCCTTCTTGTGCTGGTCGTGATTGGACTCTGTGTCTTGG
Seq C2 exon
TGCTATCAGTACAAAAATCATCAGTACAAAAAATCTGCGCGGATGTTCAAGAGAACAGAACACATACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079298-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0309410=Mlo=PU(14.6=41.2)
C2:
PF0309410=Mlo=FE(25.0=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGTCAAGTCCCTCCATCT
R:
TTCTCTTGAACATCCGCGCAG
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: