MmuEX6007338 @ mm10
Exon Skipping
Gene
ENSMUSG00000030154 | Klrb1f
Description
killer cell lectin-like receptor subfamily B member 1F [Source:MGI Symbol;Acc:MGI:2442965]
Coordinates
chr6:129045901-129053257:+
Coord C1 exon
chr6:129045901-129046032
Coord A exon
chr6:129052459-129052557
Coord C2 exon
chr6:129053183-129053257
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTATCCTTTGCACTTCTTAGATG
3' ss Score
6.23
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
AGAACTTAGAATTTGTCACTGTTCACAGTTCCCATCTCCTGTCTACAATGGACACATCAAAGGTCCATGGCAATGTAAAGCCATTTAGGTGTCCAGGGTATAAGCAAGCATCTTCTCCATCTTTCTCCCCAG
Seq A exon
ATGCTTGTCGGTGCCCACACTGGCATCATTTGGCTCTGAAATCTGGCTGTGCTGGGCTGATCCTTCTTCTCTTGAGCCTGATTGGACTCAGTGTCTTAG
Seq C2 exon
TGAGATTCCTAGTGCAAAAACCACCAATAGAAAAATGCAGTGTGGCTGCTCAAGAGAACAGGACTGAACTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030154-'0-3,'0-1,6-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGTTCCCATCTCCTGTCT
R:
GTCCTGTTCTCTTGAGCAGCC
Band lengths:
174-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types