RnoEX0047519 @ rn6
Exon Skipping
Gene
ENSRNOG00000007811 | Klrb1c
Description
killer cell lectin-like receptor subfamily B member 1C [Source:RGD Symbol;Acc:1583336]
Coordinates
chr4:162541751-162553705:+
Coord C1 exon
chr4:162541751-162542023
Coord A exon
chr4:162548813-162548911
Coord C2 exon
chr4:162552807-162553705
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTAGTCTTTGCACTTCTTAGATG
3' ss Score
4.6
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
ATAAAATTGTTTAAATTGTGTGGGCATAATGGAAACCAAGTTCAATACCTTCAGAGAAACCATCAGCTGCAAGTGTGGGTGGGTGTGGGCACAGACAGCCGAGTGTCCACAGCAGACTTCCTTTTGTTAATGTTGCTTCTCAGAACTTAGAATCTGTTACTGTTCACAGTTCTCATCTCTTGTCTCCAATGGACACATCAAGAGTCTATGGTAATGTAAAGACATTTAGGTCTCCAGGGCATAAGCAAGCATCATTCCCATCTCTCTCCACAG
Seq A exon
ATGCTTGTCGGTGCCCACACTGGCATCATTTGGCTCTGAAACTTGGCTGTGCTACGCTGATCCTTCTTCTCTTGACCCTGATTGGACTCAGTGTCTTCG
Seq C2 exon
ATTACGGATCACTGGTTCGGAGGTAGAGAACAGCTGTGCCCTCATCTCACACACAGAAGTGTTTTCAGATTCCTGTTCTTCAGACAACCATTGGATCTGCCAAAAGACCCTGAAACATGTCTGAAAACCTGTGTCCTGACTCCTGATTGTGAATCTCATCTTGATTACTTCATAGTCCACGCCAGATCTCTGCACTGAACATTGTCTGCTGCTGGCCCACCCAGGGCATAGTTAGTGGCACAAAGTATGGACTCCAAAACCACTGTTACTTTTACTGGTGCTCATCTCCACTTTATTATGTAAATGTACACAGACAGATGTGTCATTCTAGGAGAAGAGTTTATCAAAGGAAGCACAGGCCAGCAGGGGGCACTGGAGGCCTTGTGTGGTCCTTGCTTATCTCTGTGTCTTAGGTCATCTACAGACAGCTGTGGAAAACTGTCTGTAAAGTTTGGATTTTAACCCCATCCCTGCTGCAAGCCATTTCACATTTGGGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007811_MULTIEX1-1/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005916=Lectin_C=PD(34.3=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGGCATAAGCAAGCATCA
R:
GGAGTCAGGACACAGGTTTTCA
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]