RnoINT0080266 @ rn6
Intron Retention
Gene
ENSRNOG00000007811 | Klrb1c
Description
killer cell lectin-like receptor subfamily B member 1C [Source:RGD Symbol;Acc:1583336]
Coordinates
chr4:162550622-162553705:+
Coord C1 exon
chr4:162550622-162550737
Coord A exon
chr4:162550738-162552806
Coord C2 exon
chr4:162552807-162553705
Length
2069 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
AGTTATGTTTTGCTCTCCAGATT
3' ss Score
8.01
Exon sequences
Seq C1 exon
AAGTTTGTGCAGAACATTTTAAAGGGAAGACAGCAGTTATTTTTTATTGGACTAAATTATGTACAAACGGAGATGACCTGGAAGTGGATAAATGGCTCTGTTTTAAAGCCTAACAT
Seq A exon
GTAAGTTTTAAATGAATTAATTTGAAAATTCAATTCATATCCATTTTACTAAAAATTAAGTTTTATAATTTTAATTTAGTTTATAAATTCTTGAAAGGTTAAGAATAGACTGAAAAGACAAGTAAACCATTTATTGAAAGTTTTCATATACAAGTAGACATCTACCTTTTATAATAGTTTGTGGTGCGCGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTATTTTTAAATATCTACCTGAAACACTTAGATTTTTTTCTTTTTAAATATACATACTTACAGAGAATTTCTTTAATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTGCCAGTATGTATTTATGTGTACCCTGTGCATTCAGGAGCCTACAGATGTCCGAGGAGAGCATCAGATTTCCTATATTTGGAGTTAGAGATGGTTGTGACTTGCCTTGTAGGAGCTGAAAGTTGAATGTGTGTCATTTGAATGAGCTGTAAGCAGTGTTAACCTCTAAACTATCCCTCCCACTCTATACAAAAATCCTTATGTAGCTCTTTAGAATTGTGGCATAAAGTTGCATCTAAGTATGCCATGAAAGGAATTTCTCTAGGCAGTATAAGAATAGACATTGCCATTTGAAAGTAATTTCATACAAACTAACGCTTGATTTTTGTTTATATGCTTGTGTCTGTATGAATATTGATTTTGTTTTGTGTGTTTCTTTTTTTTTTTGGTTCTTTTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCGTTTTGTGTGTTTCTTAATTGTATATGATGTAAAATGCTTATTTAATCTTGATTCACAATACAAAAATATAATAATATGTGAAAAATTCATGTAAAGCAGAGGATTATGATTGGTTGCTGTGCGATTTTACTCTTGGATAAAATGATGCTCTGATCAAACAACAACAACCAGGTAAATCTGGAGGGCGTCCTGCTACAGGAGAGAGTCAGCTGAAGCCTGTTTAGTGTACACTGCACTGAGGCAATGGCTCCAGGTACAAGCTCTAGGTGTCTAAGCCTCACAGCTCATTCCATAGAACCCATCTAAAAAGCCAGATGCAGAAGTGAATACCTGTATCTCGGCACTCTTGCAGAGAGATTGGTGGTGAAGACCAGACAATGGCTTAGAAGAACTTGGGCCAGTGAGACTCCAGTCCAAAGCAGGTAGAAACAACAAGGGACATACTAGGGTGTCATCAAATTTGCTGTTCACTCCCAAGGAACTCTATAGAAAAAGGAACAGAGGCAAAGGCACAGGAGTGAGGGAGGTTGCCTACTGTCTGATATGTTATATCCTGATAGCGACAGGCTAGTCTTGAACACACCCTTCTTTACAATCACCCAGAAGATGCCTGTGTTAATGTTGGCTTCTGGTCTCATGTACGGGAATAATGCTAAATTGAAGCAAAGACCCACCTGCTTTGGGATGACACAGGAACGAATTGGATCCTGTTCAACACGAGCTGAGGCTCTTGTCCTCTCTGCACCCAATTCTGCAGACCCACTGTGTTCATTCTGTTTGTTGAATACAGTTACTGAGAACCTACTGTGTGTAAGGGTTGACATGCATTCATGTATATCTCAATACCTCCCCTAAACATTAGCTGGTTCAACCCTATATATTTTAGGAAACTGAAGCTCAGCAAATGAAAATGCTTTCCACATAATCACACAACATGTTTGTAGTAGATGGAATAGGTTTCACCTCCAAATCTTAAACCTCCTCTTTGTACATCATGATAAATATTCTTGCTGGAAGAATTCTTCTCCAGTGACAGTGCAATGCAAAATTATAGGGGTTGCTATTAGCTGTATCTTTAATGTTCATATGTGTTTATAATGTTTGTCACTGTGTGTTTACTATACATAAATACCATCTAATCTAGAGAATTCTTAAAAGTCCAAACAGAAATGAGGGCTGATGTAATAATTGTAAGAAAATCTTGGACACTAGGAGCAGTTATGTTTTGCTCTCCAG
Seq C2 exon
ATTACGGATCACTGGTTCGGAGGTAGAGAACAGCTGTGCCCTCATCTCACACACAGAAGTGTTTTCAGATTCCTGTTCTTCAGACAACCATTGGATCTGCCAAAAGACCCTGAAACATGTCTGAAAACCTGTGTCCTGACTCCTGATTGTGAATCTCATCTTGATTACTTCATAGTCCACGCCAGATCTCTGCACTGAACATTGTCTGCTGCTGGCCCACCCAGGGCATAGTTAGTGGCACAAAGTATGGACTCCAAAACCACTGTTACTTTTACTGGTGCTCATCTCCACTTTATTATGTAAATGTACACAGACAGATGTGTCATTCTAGGAGAAGAGTTTATCAAAGGAAGCACAGGCCAGCAGGGGGCACTGGAGGCCTTGTGTGGTCCTTGCTTATCTCTGTGTCTTAGGTCATCTACAGACAGCTGTGGAAAACTGTCTGTAAAGTTTGGATTTTAACCCCATCCCTGCTGCAAGCCATTTCACATTTGGGCTGTAGAATCTTGATTAAAAGTCTTGTTGTTGACTGACAGCAGAGGCTCAGAGTTGAGGATCTTGAGATGGGAAGAATTTGTATTGATGGACACTCACAAATTAGTTTATTAATAATAGACTGATAAATCATTTGGATGTCCTCTTCTTTTAAAAAAACAAAACAAATAAATAAATAAACCAAAAACCAAAAAATAAAAAAAACTTTGGCCAAAGGTTCCATTGTAATCAAAAGAAAAATATTTTGTTTACTGTATAAGAGGCATAATGAAATTTCTTAGAATAGATACCTATTGATTCATATATCACTCAATATGAAGTGTAATAAAATTTAAGCAAGTGCTATGATCCAAGTAGAATCGTAATTAAAATTAATTCTAAATTAAAATTATTATTTAGAGCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007811:ENSRNOT00000010312:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(37.3=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(34.3=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]