BtaINT0082846 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012029 | KLRB1
Description
killer cell lectin-like receptor subfamily B, member 1 [Source:HGNC Symbol;Acc:HGNC:6373]
Coordinates
chr5:100957606-100961494:+
Coord C1 exon
chr5:100957606-100957721
Coord A exon
chr5:100957722-100961349
Coord C2 exon
chr5:100961350-100961494
Length
3628 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
TCTTTTCTTTTTCTCCACAGATT
3' ss Score
13.33
Exon sequences
Seq C1 exon
AGACTCATGCAAAACCTGATAAACAAAGAAGGAATTCTGTTTTGGATTGGATTAAATTTTACATTATCAGGGAAGAGCTGGAAGTGGATAAATGGTTCCTTTTTAAATTCTAATAT
Seq A exon
GTGAGTATTAGATAAGCTAATTTGAATATTCAATTTGTATCAGGTTTGCAAGGCAAGATAGTAACACTGCTATTGAAAACTGAGATTTATAGTTTTAATTTAGTTTAGAAATTTTCAAAAGAAGCAGTATAGTCTGAGAAGAAGAATGATTTTTGAAGTTAGTTGAAGGATTCATATTGATGTATGACAAAACCAATACAATGTTTTAAAGTAATTAGCCTTAATTAAAATAAATAAATGAAAAAAATTTTTTTTAATTTTTTAAAGAAAATCTCCATATATGAAAAGACATCACTCTTTGTCACAATGTATATTTTTAATTACAATGGAGTTTTAAGAAACAGGGGATAGACCAACTCCTTTGGGAGGGACACCAAAAAAAATTTTTTTAATAACAAAATTTAAAAATAAAGAAATTTTTAGCTGGATGCTATTGGACAAAGAATTTTTGTTGCAATATTATTAAAACAAAGAATTTAAGTAGAACTTTTCAAACTATGGGACCAAATAAGTAGGCAACATCCAGCATTGAAATAATGAATACGAGAAGAAAAAAGTATAGTAAATATCAGATTGTGGAATCCAGGCATTTGAGAGAATTGGCCAACTTGTGACAAATATTGTAGCCTATTTTAATCAGTGGTGTAGAAACAGAGTTGTTTGAGGAGATGCAATGAAACTGCATAAGCTGTGAAAGAGCTTTTTGCTATTTTTTAAATGTTTTTATTTATTTATTTATTTTTGTCTGTGCTGGGTCTTTATCACTGCTCAGACTTTTCTCTAGTTGCTCAGAGTAGGGGCTACTCTGTAGTTGTAGCATGTGGGCTTCTCATTGTAGTGGCTTCTCTTGTTGCAGAGCACAGGCTCTGTAAAAAAATTTTGATGAGCTTTTCAGAACAGATGATATCTTGTTATGATTTTTGAGTCTGTGAATGATATATTTACATTTGTATAAAGGATAGTTAAAATTGATTTTTTTATCATTCAAAAAAATAAGACATTAAAATTGAAGACATAGGAGTGGGTAAAAATTTATATAAAATAGAGTAATAATTTGTTATGTAGAAAATTACAAAAAATTGAGAGACATGTTGCTTTAATTAGCAAATTTTTATGTTGCTTCACCCATGTTCTAAAATATAATATTTTTAAATACAGTACTTTAAAAAGAATATCACTTTAAAATAAAGGGTCCTGGACAAGAATAAATGTATGAAAAGGCAAATATATTTTGTTACATAAAATCTATTCTGATTTTTATTTGTTTTCCAGGAATTATATTCTATACTTTATTTACACATAAATGCAATTCTGATATTAACTTATTTCTATTTTTCTGAACATAGAAAAACGTTAATTTCGGTTTCTGCGTGGGTATGTTTCTTATTGGGCCATTATGTTTATTCTATTAAGCTTTATGATAAAATTGGAAATCTCTGAAGTGTCTATGAGCAGAAATATAGGCAAAGTTGATGAACTAAATTCAATTGGCATTCTATTCTATTCTGAAGACTGAAAGGATGCTTTGGTTAAGACAGTAATCAGGTAACCCTGAAAGGTATCATATGATAGTAGAAAGAGTAGCAGTTAGACTCGCTTTTCTTTAGTTCTCTACCCTGGTTTTCAAGTAATGAAAAACATAAACAGGAATAATTTTTTTCACTGCTTTGGGGATTAAAGAATATAACACTAAAGAACTAGGCAGAGATCTGGTCAAAGAAGGCCTGAGAAGTCACTGAGGGTCTTTTGAAAAAGGGCTTGGTCAAATGAGCATTCAAAAAGTTATCTTGAAATTTGAAGAAGGGGACCAGAAGGGTGAAAGAGATAAAACACAGGGGACTTTTGCTATTACTCACTTGAAAGAAGTGCTGATGTGACTAGACTGTCAGGCCCTAGGAGGGAATCAGGTGGACTTCTCAGGGCCAAGGGGCTTTATGAAGAAACGGAACAAAGTAACAAAGAAAATCTGTGATGGAGCCCTGCCCACTGTACCACTTCACTTTCGATTTAGGACAAGCAGGTGAACGTCTTGCGCATATCCCATCCTAGCACGCCAGTTCTGCGTGGCCATCCCATTCTTTGACTGCTTCTCACACCACATCTGCAATGAGCCACAACACTCCTGCATCTTTGGAATTAATAGAACATGGATCACAGCAGACACTCGTGTACTGTTTGGAATCGGAAAGAAAGGAACCTTCCACTGCATACAACATGAACTGAACCTCCTTTTCTGGCCACATTCAAATTCTGCAGAGCCTGTGTATCTGTACTTACTTACTACATTTCCTGAGCACATACTCTGTTTAAGCCTGATCACACTTCTATAGGTATCGTCTCAATGCCTCCCCAAATACTAGGTCGTTATATCCTAAATATTTAAGAAAATCAAAATTCCATGAAAGCAATAAGTTTTTCATGTGATATGTTAATAGGAGATTCAGTTTCCAATTTTCAAAGCTTCATTTTGTATATCTCATGATGACATTTATGTTTAGAATGCTTTGCTTCCAGTGAAGATGAACTTGCAAGTTCCAGATGGTTGATTAGCTTTCTTTTAAAAGTGTATATTTATGACTGACTGTGTAGTTATCACTGTTAAGTTGCTAAGTCGTGTCCAACCCTTTCTGACCCCCATGGACTGCAGCTCCCCAGGGTCCTCTGTCCTCCAGTGTCTCCCAGTTTGCTCAAATTCATGTCCTTTTGAGTCAGTGATGCTATCTAACCATCTCATCCTCTGCCTCCCCCTTCTCCTTTAGCCTCAGCCTTTCCCAGCATCAGGGTCTTTTCCAATGAGTTGGCTTTTCCCATCAGGTGGTCAAAGTATTGGAGCATAAGTCCTTCCAAAGCCTCAGCATCAGTCCTTCCAAGAAATATTCAGGGTTGATTTCTTTTAGGATTGACTGGTTTGATTTGCATGCAGTCCAAGGGACTCTCAAGAATCTTCTCCAGCACCACGATTTGAAAGCATCAATTCTTCGGCACTTACTCTCTTTATGGTATAAATTTCACATCAGTACATGAGTAATGGAAAAGCCATAGATTTGACTATACTGACATTTGCTGGCAAAGTGATGTCTTTGCTTTTGAATATGCTGTCTAGGTTTGTCATAGATTTCCTTCCAAGGAGCAAGTGGAAAAAAAATGAAAGGGAAAGTGTTAGTCCCTCCGTCCATGACTCTTTCCCATGCTATGGATGTATCCCTCCAGGTTCCTGTGTCCATGGAAATGGAATTCTCCAGACAAGAATACCGGAGTGGGTAGCCATTCCCAGGAGCAAGTGTCTTTTAATTTCACGTCTTCAGTCATTGTCTGCAAAGATTTTGGAGCCCAAGCAAACAAAGTCTGTCACTGCTTACATTTTTTCCCCTGCTATTTGCCATGAAGTGATGGAACTGGATGCTAAAATCTTAGCTTTTGAATGTTGAGTTTCAAGCCAACTTTTCACTGTCCTCTTTCACCCTCTTTCAGAGGCTTTTTACTTCCTCTTCACTTTCTGCCATTAGACTGTTTATTTACCCAATGCTTCTCGTTGTTTCCTGAAAGTTATAGAAAACACTGGCTGGATGAGGAGAATTGTGTGAGAAAATCATGAACACTAAAGAGAGTCTTTTCTTTTTCTCCACAG
Seq C2 exon
ATTACCCATTTTTGGTGATGCTAAAGAAGACTGCTGTGTTTACATATCAAAGACACAATGTATTTCTGATTACTGTGCTGCAAAAAATAGATGGATCTGCCAAAAAGAACTAAAACCTGTCAGAAACAAAGGAATATATTCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012029:ENSBTAT00000015955:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(37.3=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(34.3=71.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]