RnoINT0080256 @ rn6
Intron Retention
Gene
ENSRNOG00000057410 | Klrb1
Description
killer cell lectin-like receptor subfamily B, member 1 [Source:RGD Symbol;Acc:1587563]
Coordinates
chr4:162790278-162792804:+
Coord C1 exon
chr4:162790278-162790393
Coord A exon
chr4:162790394-162792680
Coord C2 exon
chr4:162792681-162792804
Length
2287 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
GCCTATGCTTTGCTCTTTAGATT
3' ss Score
9.16
Exon sequences
Seq C1 exon
AAATTATTGCAGGACTTCTCAAAGGGAAAAGGACAACAATTTTTTATTGGACTAAAATATGTACAAGAGGACAAGGTTTGGAAGTGGATGAATGGTTCTATTTTAAATACTAATCT
Seq A exon
GTAAGTATTTAATGAGCTAATTTGAGTATTCAATTCTCATTTTTCCTTAAAATTGAAATTTGTAATTTTAATTGACTTTATGAATTTTTAGAGGGTTGAAATAGTCTGAAGAGTCAATTCCAAAATTAGTTGAATTGTTTATGTACTTTCAATTCTTTTGACATTAACTCCTTATAGTAGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTATAATGGAATTTTAAAGGACAAGAAATAGACTAATTTAAAGTTAGAGATAAAAAATTCTAAAGTCTATAGAGAACATAGATTTTCATATAAATTTATATATATATTTAAAATATATTTGTTTTATTTTATGTGTGTTTGCCTGGGTGTCTCCATGTATACCATGTGCATGCAGGAGTTTCCAGAGGTTCAAAGAGGGTATCAGGTTCCCTGGAACTGGAGTTGCAGATGGTTGTGAGCTGCCTTGTGGGAGCTGGTAGTTGAATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGCATATGTTTGTCAATTGTGCTATGATTTAAAACTTTCTTTAATTTTAACTAATTTTAAAATTAGTTAAAAATTTTAAATTTTAAAATTAATTTTAATTAATGTTAATAGCAAAAACTATGATAATAAGTAAAAGAATACATTTAAAGCAGAGGATTGAGCACAGTTGCTATGTGATTTTACTGTTTGGATAAATGATACTCTGATTAGACAGCAGTAACCAGGTAAATCTGGAGACTGTCCTGCTACAGGAGAAAGGGAGTCAGTCAAAGCCTGCTTTTGTTTAAACTGGACTGAGACAATGGCTCTCGGTACAAGCTCTATCTGTGTAAGTCTCACAGTTCATCCCACATAAAAAGGTATATAAAAACCCACATAAAAAGGCATATTAAAAAGAACCCATATAAAAAGGCAGATGTGGACGTGCGTACCTGTATCTCAGCATCCCTGCAGAGAGATGGGAGGTGGAGACCAGAGAATCACCCAAAAGAACCTGAGCCAGTGAGCCTGGAGACCACAGCATAGTGGCAGAAACAAGGCAGAAAGGGAGGCTATGCTCAATACTGACCTCTGACTTCCCCACATGTTCTGACCCTCCTTCCCTCACCCTATCTCCTCTCTAACTATTTTACCTCCCCGATCCCTGGTTTTCAGGTAAGAAAACCAAGAGGAAAATAACATTTTCCAAACAGGATTATTTGGTGGAATTGAATAAGATAATGTTAGAGTCCTCACAGGAAGTCTGGCTGAGGAAGACCAAGGAATCCATTAAAGGCTTTTTGAAAAGAAGTTATTAATGTGAACAGATTGGCTTTAAGAAAAGGTTCTTAAAGATCAAAGAAAGAAGCTAAAGGGTGAAAAATAAAATTAAGGGACATTTATGGATGCCCAATTGAGGGAAGCTCATAGTTTGACTAGCATGCTGGGCACTAGGATAACATCAAATTTGCCGTTGACACACAAGGGGCTCCATCAAGAAATGAATAGAGGCAAAGAAACAGCACTGAGGGAGCCCTGCTACTGCCTGATGTGTGACCTCATCAGCTGGGGACAGGCTGGTCTTGAACTCACCCTTCCTTGTAATCACCGAGAAGATGCCTGTGTTAGTGCTTTGCCTCTGGTCTCATTTCCACCTGTAGGAATCTGCAGGAACTCCAGATGAGTCCAGTGCTGCTATGAAGCAAAGGCCCAACAGCCTCTAGGATGAGACAGGAAGGATTCCTATCCTTTTTCACATGAGTTCGGGGCCTTTTTCCCTCTGCATCTCATTCTATAGACTCACTGCATTCACTCAGTGTGTTTAATACATTTACTGAGAACCTACTGTGTGCTTGTCATACATTCATGTATATCTCAATGTCTTATCTAGCATTAGCAGGTTGGTTATACTACATACTTCAGGATATTGATGCTCAGCAAAATGATGATGCTTTTCACATGATAATAGGACATGTTAATAGTAGAATGAGGCATTCCATCCCCAATTCCTAAACAATCTCTGTTTTGTACAGCATAATAAAGATTCTTGCTGCAAGAATTCCTCTCTAGTGAAGGTACAATTGGAAATTATAGGGGTTTCCATCAGCTGTATCATTATTGTTTATATGTGTAATTAATGTTTGTCACCATATGTTTACTATGTCTAAACACAGTGTAATCTAGAGTTTCCTTAACTGTCTAAAGAGAAATGATGACTGATGTGATAATTGTCAGGAAATCTTGGACACTAGGAGCAGCCTATGCTTTGCTCTTTAG
Seq C2 exon
ATTACGCATCACCGGCAAGAACGAAGAAAACAGCTGTGCCCTCATCTCACACACAGAAGTGTTTTCAGATTCTTGTTCTTCAGACAACCATTGGATCTGCCAAAAGACCCTGAAACGTGTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057410:ENSRNOT00000084289:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(37.3=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(34.3=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]