MmuINT0088243 @ mm9
Intron Retention
Gene
ENSMUSG00000079298 | Klrb1b
Description
killer cell lectin-like receptor subfamily B member 1B [Source:MGI Symbol;Acc:MGI:107539]
Coordinates
chr6:128763724-128768606:-
Coord C1 exon
chr6:128768491-128768606
Coord A exon
chr6:128765337-128768490
Coord C2 exon
chr6:128763724-128765336
Length
3154 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
GTTATTTTCTTCCTCCTCAGACT
3' ss Score
8.96
Exon sequences
Seq C1 exon
AGATTCCTACTGGACTCAATAAAGGAAAAATACAATTCATTTTGGATTGGACTAAGTTACACATTAACAGACATGAACTGGAAGTGGATAAATGGCACAGCTTTCAATTCTGATGT
Seq A exon
GTGAGTACTAGAAGAGCTAATTTGAATATTCATTTCTGTTGCAGGGGCTTTTGGGGGTCCCCTTGGGGCTAATAGTAAAGACATGGAGAATCTGTGTAGTCTAAGCCTTTTACGTTAGCCTTTCTGCTGGGGACTGTCCCTCAGCAGCCACCTACTCCACCTGCCTCACCTGCCCCCATGTCTGCATCAGGGCACTCTCTGCTCTGCCCACTTCCTCCTCCAGGTCCAGCCTCTAGAACCTATCAACACACATAATTGCTTCTCATTTCTTTATCTTTTTTATACTTTCCTATACTTTACATGGAATCCCTTAAGCAGCACATTTCAAATTTTGGTGAAAATATGTAGCCGCCTGAGGCCACAATAACTGAGTTCCTGAGTGGGAGGCCGGAGCTGTATGGAAGGAAACGGTGGGTGAGAGAAATAATGGAGGCCAAGACATGTTTCTGTTCAAGGCCCCAAAGTTTACTAAGAGTCTGTGCTTATAAAGGGGGAGGCTCATCCCCCCCCCCCACACACACACACACACAACCCATTCTTGGTGCCTGTTGCCAGCCTGTAGGGGATCTGCCAGATGCTATCTCCAGAATATCTCAAGGGCCTCTCAGCAGGTAGCAGTGTCTTGGAGAAGAACAGTAGCAAGGGACAGAACAATAGAGCCATCTAAGTCATAAGGCTCCACCCCAGGTGGTCTCATACTCGGTGGCAGCAAGGTCAAAGTCAGCCTACTCAAGGCTGGGGGAGGCTACAAAAATACAGAACAGGGAGTCTTCAGATGCCTTTATCAGGTCCCAACTGACAGGTTGAGCATCACAAATGTTTTTTTTCCAGAGAAGCAAAGGACAGTTTAAACTCCAGTTATCTATAGGAAGTACTAATAAACAATCTGATGTAAACCCACCAATTTCTGTTGCACTTGGAGGAGCACGAAAACAAATCCTAGGAATATTTCATGTTTTAAAGAAACAGATTCACAAGACTTTTGTCCTGTTTTCTTGGAGTGTTCTAGCAAGCTCTCAGACTTCTACAGCTATATTCCTAGGCTGTGCCATGACAACAACATAGTATAGATAGATTATGAAAGAAAAAATTACAGTAAATATAAGTATGAATCTTTGACATCTGAGAGAAACTACCCACATATTAAGTTCTTGCAGAGGATGCAATAAAATTGCTTATCAACCAACTTTTTGATGATAAAAACATTGTTGTCACCATTATAAAATATCTGAGATAAACAAGAATGGAAAGATGATTGGGTATCTTTTTTTTTTTTTAATTTGAGAGGTCTCAGTCTATAGACTGTTGCTCCATCACTGTGACTCCTGTGGCAATGCAGAAACACAGTAGAAGGGCAGAGACAAGCCAAGATGCTCAGACAGGAGCAGAGAGAAAGGAGACACAGGGGGAAGATAATCCTCTCAAAGACCTAGCCTCTTGCTGGGAGGCTCACTTCATTTAGCTGGAAACTCAATGAGTTAGTCCATTGACAGAATTGGAGTCCTCATGACCCAATAACCCATGGGTAGCATCAGCTGGACACAGGGGTTTCAATATGTGCCCAGTTAGGACACACATGGTTCATAAGCCATACATGAATGTGGATCACAAAGCAGCCATTAGCTATTTGATCTTCCGTGTCTCATTTTCTTATTATGTGAGATTGTCGAGACAACCACAAATACAATGGGAAAGATGATGCCTCATAGTTAAGTTATATATTTTAGCAGAACTCATAATTATTGGTACATCGAGGAACAATGCATCACAGCTCCAGAGACAGTAGGACCTGGGAGAGGTCTTTTAATGGAGCCAATAAATAAGATGGACTAAAGTCTCATGCAATAATCATCATTATTCAGAGCCACAGACAATTTATACTGAAGGCTGAGAAAGTTCATATGAGTTCAAGCTGTAGACAGTAACAAAGACAGGTTGAGTTTGAAAAATGTGTTTTTCCAGAGGAGCACAGGGCAGTTTAAACACCAGTTATCTATATGAAGTAGTAATAAGCAATCTGAAGTAAACTCACCCCTGTCTGTTGCACTTGGAGGAGCACAAAAACCAATTCTAGAAACATTTCATGTTTTAAAGAAACAGACTCACAAGACTCTTGACCTATTTTCTTGTAGTGTTCCCACAAGCACTCAGACTTCTACAACTATATTCCTGGGCTGTGCCATGACAACAGCACATGTCTGTTTTCATTCCTGCTCAGTTTCAGGAGCTTGTTGTTAAGACTTGTGAGTTGTTTACTTACTGAGATTTAAGGAGCTTCCCTTTAGAACTTTATGATTATTATTTATTTAATTATTATTATTATTTATTTTGTTGTTGTTTTGTTTTTCAAAACAGGGTTTCTCTATATAGTCTTGGCTGTTCTGGAATTCAATTTGTAGATCAGGCTGGCCTTGAACTCATAGAGATCCACCTGCCTCTGACTTCCAAGTGCTGGAATTAAAAGTCACCACCACCCAGCAAATTTTCTGAATCTTAATGAGCCTCCCTCCAGGATGGAACATTTCAGATCAGAAGAAATGGCTACACAACAGTGTGTGTGACCCTTTGAGTTTAATTCTGATTGCTAACTTGAATACGAATAGGGGATTATTCATGGAAGCATAGGCAAATTAATGGCTATATCACTGAAGAAAATAACATCTTCTCACCTAGCAACTATTAACTGCCCATAACCTCAAGGAAGTCTGGGGTCTCAAGAGCTCCCTTTCTACCTGGGATGGAATGTTGGCCATCCCGTCCCAATCTTGTGCAGGTTTTGTGCAGGTCATCACAGTGGCAATGAGTTCATGAGTGACCGACCGAGTCAAGCCCGGAAGAAATTTTCATGGCACTCCTCCTGTCCTCTGGCTCTCACAGTCTTTCCATCCTCTTCTCCATGATGTTGCCTGTGACAGGTGGTAGGGGTGATGGAGTAACTGGCCTACTTAGGGCTGAGCGTTCACCTATCACTTATTCTCAGAACTGTGACCACTTGTAAGTCTCTGCATTAACTACTTCCCACTACACAGAGAAGGTTCTGTGCCTAAGAACTGTGTGTTCCATGGTCCTTAGAAGTCTAGAGGAGAAGATGGCCAACTCGGGAGAATTATAGAAAATCCTAAACACTAAGGGCGGTTATTTTCTTCCTCCTCAG
Seq C2 exon
ACTAAAAATCACTGGTGTCACTGAAAATGGCAGCTGTGCCGCCATCTCAGGAGAAAAAGTGACTTCTGAGGGCTGTTCTTCAGACAACCGTTGGATCTGCCAAAAGGAACTAAACCATGAAACCCCGTGTAATGACTCCTGACTGCGAATCCCATCCTGATTACTTTACCATCCGCACCAGATCTCTGCACCTAACCTGTCTCTGCTGTCTGCCTCCCAGTGCAGTTAGTGGCACAGCACATGGACTCTGAAAACACTGGGATTCTTAAAGGTTCTTCATTGTATAAATGGAAGTGTACACAGACACAGATGTGCCGTTCTAAGAGGAGTTCTGTGGAAAGAAGCCCTGGTAGCTGAGGGGCACCTGATTTTAATCCTTGAGTCTGTGTGACCTTTGCTGGTCTCTGTCCCTGAGGTCACCTGCAGACAGCCTCGGAAGACTATTGGGGAAATCTCCATCTCTCCTCTGTCCCCTACTAGCCACCACACTGAGGAATAGAATATTGACTAATGCCTTTGCTCTCAAATGACACCAGAAGCCCAGGGTTAGGGGATTTGGGGGAGAGACTGACAGGTTTAAATAGCACCCACATATCCTGGGTAAACTGAGCTCTGGGCACGTGATGCCTCTACCAGGCCATGATGTACCAGCAGACCCTGAGCCAAGGCTGGCACCTTGGGGCTAGGCTTCTCAGCTCCATTACTGGCAGAGAGGGCCTTCTTTTCTTTGAAAGGTTTTGGTTTATGTGACAGAAAAGCAAACTAAGGTAACTTACCTCTTCCTGCCGTCCTTTTTGCTCTAGTTTGCTTCACAGTTCTTCTTTCCATGATTGGGGAAAATTAAGCTTTAAAAAGATACATCTTTTGAATGTCCCCTTTTCTAAAAATTTGCCAAACTTTCCATGAAAATAAAAGGAGTATGAATATTGAATTTACTTTATAAGGAGACCTAAAATGTCTTTAAAAAATGGGCTTCTACAAGTTCTTATCATTCCATTTCAAATTGAATTACTTAAACTGAAGTACATGATATCATGATTCCAATGAATTCTCCACTTCTATTTGCCAGGAACAAAGAGTTTTAATATTTGATAATAATGACTTTCAATACACTGACACTCAAAGAATTAATTCATTTTGTGAAAATTCCTAGAAATCAATTTACCTAAGGAAAAACTTCAGAGAAAAGCAGCGCTAGAAATCAATCCTTAACAACAGTGGTGTTTTAGGAGCCTATAACTGTTAAGTGCATGGAGCATGCAGCTAAGCAGATATGAGCAGGAGGGATCCCATGTAAGAAAGTAAGACACCAGAGGACTTTCTCAGTGGCCATATATGCTACCAATGAATATGCTGATGAGAAGGGAAGGCACAGCTGTGGGGACATCTTGGTCCTGAATCAATGTCAGCAGAGTAGATAAATGAAGCTGTCTCCCAAAGGCAGGAACTTGACATTGACATAGGAGAGAGGAACCCAAAAGACATTTTTTTAAAATCCACCATCTAGATCCCCGAGGGCTGCCACCCACCTCCAGACCAGCCTGCTCCAGTATTCTTCTGGAGTTTGTTATGAATTCTTTTGCTTTGCTAAATAAACATGGGCTCTATCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079298-Klrb1b:NM_030599:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0309410=Mlo=PD(5.2=12.8),PF0005916=Lectin_C=FE(37.3=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(34.3=72.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: