HsaINT0088949 @ hg38
Intron Retention
Gene
ENSG00000111796 | KLRB1
Description
killer cell lectin like receptor B1 [Source:HGNC Symbol;Acc:HGNC:6373]
Coordinates
chr12:9594551-9598161:-
Coord C1 exon
chr12:9598046-9598161
Coord A exon
chr12:9595422-9598045
Coord C2 exon
chr12:9594551-9595421
Length
2624 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
ACTTTTCTTTTGCTCCACAGCTT
3' ss Score
10.1
Exon sequences
Seq C1 exon
ATACACACACAGAACCTGATACGTGACAAAGCAATTCTGTTTTGGATTGGATTAAATTTTTCATTATCAGAAAAGAACTGGAAGTGGATAAACGGCTCTTTTTTAAATTCTAATGA
Seq A exon
GTGAGTATTAGATGAGCTAACTTTAATATTCAATTTATATCAGGTTTACACTGCAAGGTAGTAACACTGAAGATTGAGTTTTGTAGTTTTAATTTGGTTTAAAAACTCAAGAAGTTCTGAATAGGCTAAGAACATGGATGATTTCAAAGTTGGTTGGAAAGTTCTATATATGAAAAGATATCAGCTCTTTATGAGAAAATATATTTTTATCTGCAATGGAGTTTTAGGGGACAGGAAATAGACTAACTTATTTGAAACGGGCACATTAAATTAAAAATAGTGATTATCTGGAGACCACTGGCACACAGAATGTCTTACGTTGTATTTTTCAAACTGTGGGAAAATATACATTAGTAGGTAAAGAGACCAATTTAGTGGGTCACAGCTGGCATTAAAAGAAAAGAAAAAATAGTAAATATCAGAGTGTGGAACCCAGACACCCACGTTGTGACAAAAATTGCAGTATATTTGAACCACTGGTGTGAAAGACAGAGGTACTTGAGACGATGTGATGAAAACATGTCTAACCCACAAAAGAGCTATTTGCTGTTTTCTCTTCAGTGTGACATGCTTTTGTCTTGTGTAAGATGGTCAAAATTACCATCAACGTACTATGAGGCATTTGCGACACAGGCAAATTTCATGTTTTAGCAGAATTCATGGATAATTTTGCAGAAAAAGGCAGGGTGTTTTCTTCCCTCACAAGCGAAAATGTATAGGCCTTCAACCACATTTCTGTAAAGAACTTTTAATGAGTTTTTCAAAAGAGATAATATAAACAGTTATATTTAATGAGTCTGTAAATGATTTAGTCAAATTGGCAGAATTTACATTTAAAATGTATTTTCCGTCACTCAAAAAACAAGAGGTTAAAATCTAAAACATAGGAGAATGTTTTAAGTTTGTCTACATTATCCTAAGATAATTTATTAAGTATGGAAAGTATTAAACACTGAAAGAAATGTTGGCTCAATCAGCAAAGTTTTGACATTATATGAGCCACATTCTAAAATATTTTATAAAGTGTAAGATTTTAAAATAAAGATGATTTAAAATAAGTGTTCTGGACTAGAATAAATTTATGAAAAGCCAAACATACACATTATGTTTAAAAACATCTCTCTTGATTTTTATATTGCTTTCTGGGGGTTATTTTCAATATTTTATTTACAAATAAATGAAAGTAGGTTTGCTATTAATTTATTTTTATCTTTCCACACATGGTATTGGTGAATTAGCATTTATTAAGTATAGTTTGTGTGTGTGTTTCTTAATGGGGTCATAATGCAAAATGTTTATTTTATTGTGGTTCACAGTAAAAAATAAAATTTGAAAACATTGAAATGTGAACATAAATATGTGTAAAGTGGATGGAGGAAATTCAGTTGAACTTTTCATTTTATTCTGAGGAGAAAGATGATGCTTTAAGATAATAGTGATCAGGTAAACCTGGAAGGTATCACGTTATAGTAGAAAAAGCACCAGTTAGACTCTGCTTTTATTTGCAAGGCAAGGAAAGAAAGGGAAGAATCATAATTTTTTTACAGGATTATTTTGGGGGCTACAGGAGACAATGTTCAAGAGCTAGCCAGATGTCTCATCAAGGAAGGCCTGTAAAACCACTGAGGGCCTTTTGGAAAAGGAATTGTTGACTTGGCCAGATTGGCATTTAAAAAAATTACCCTGATAATTGAAGAAACAATTAAAAGGGTGGAAGAGATAAAATATAGGGAACTTTTGCAATAGCCCAGTTGAAAGAAGTTCTTGGTTTGACTAGAAGGTTGGGCAGTAGGAAGAAATCAGACAAGCAGCCCCAAGAGGCTACATGAGAAAATGGAACAAAGGACTAAAGAAAAGCTGTGATGGAGCCCAGCATGCTGCCACCACCTCATCCGTTTGAGACAAATAGGAGAGTCTTGAACTCACACCGTCCTTGCAACTCAACCCCAATACAGCCTGTCCCTTTGTTTGAATTATATCATCACCTCCTACCTGCAGTGAGCCACAGGACTCATGTCTGTTTGAAACTAATATTATGTTTCTGCAGACACCTGTTCACCTCTGTTTGGAATGAGAATGAAAGGAACCTCTGACTACATAACCATGAACTGAGCCACTTTTTCTCACTGCTTCCAAATTCTATAGACCCTGAATATCCATCATGCCTCTAGATATTTATCATATTTACTCAGCACATATTTTTGAAGTATTGCCACATTTTCATATTTCATCTCCATGCCTCCCCTAAATATTAGGTGGCTATAGCCTAAATATTTAATAAAACTGTGGCTCAGTAAAGTTAGGAAACATTTTTAATGTGACCTGTTAGTAGAACAATAAGAAGACTGAATCCCCAGTTTCCAAAGTTTCTTTCTTTTTTTAATGTAATTGTGAAGTTTCTTGTTAGAGGGATTCTTTTCCAATGAAGATGAACTTGGAAGTTCCAGAGGTTTACATTAGCTCTATCTTAAAAGTTCATACCATTATATTTGTGACCGTGTGCCTTCTTTGTTTAATAGTTTATCATTCTACTGCTTCCTGAGAGTCCTAGGAAATAATGGCTAAGTGAGAATAGCTCTGAGAAAATCATAAATGCTAAGACAGACTTTTCTTTTGCTCCACAG
Seq C2 exon
CTTAGAAATTAGAGGTGATGCTAAAGAAAACAGCTGTATTTCCATCTCACAGACATCTGTGTATTCTGAGTACTGTAGTACAGAAATCAGATGGATCTGCCAAAAAGAACTAACACCTGTGAGAAATAAAGTGTATCCTGACTCTTGACTATGAATCCCATCTCAATTTATTTGCTTCCCATTACTGATCTCTGTACTTGTAGCTGCACATACTATTGGTACTACCTAATAGTGCCACATTTAGTGGCACAAAGTGAACAATTCTGAGAATTGACAACTGTTATGAATCTTACAGAAGTTCATGTTTATCATATTCATTCTATTAAATGAGGAAACAGAGACATAGAGAAAAACGTGCATCGTTTTAAAGAAACAGTGATATTCTATGGTGAAGGAGTGAAGGATGTCCCCGAATATGCCAGATTGGTATATGATTGTTTTGTGTTTAAAACAGTGGAGAAATTGTAGATTCAGAAAGGGAGAGCTGACCTGTCTCTTCCCGCACGCGGCAAGCCGTGAAGATTCCTCTGGGAGGGCTATCCGAGTCATACAAGGGCAAGAAAATAGCTCTTATCGCCAGAGACCTGGAATTGGATGCTGCAATGAACCTGAATAAAGATACTTAATAAACACCTATCTTTCACCTATTTTACAGCCCCCCGCAACCAATATATCTCCTAGTGACTCCTCTAGAAAATTTATTGCCCCTAGCCAGCTTTTCTTCATCCTGTCATTTCTTTTCAAATTTATCATTCTTGGTCTAAAAAGCATAAAAGCATCTTGCTTAGGCCACTTCTATGGATTTCACTCTCTTGCGAGTTCCTCATGTACATGCAAAACGAATAAAATGTGTATACTTTTATTTTGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111796:ENST00000229402:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(37.3=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(34.3=70.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development