RnoEX0047522 @ rn6
Exon Skipping
Gene
ENSRNOG00000007811 | Klrb1c
Description
killer cell lectin-like receptor subfamily B member 1C [Source:RGD Symbol;Acc:1583336]
Coordinates
chr4:162541751-162553705:+
Coord C1 exon
chr4:162541751-162542023
Coord A exon
chr4:162550622-162550737
Coord C2 exon
chr4:162552807-162553705
Length
116 bp
Sequences
Splice sites
3' ss Seq
TCACTCTGTTTTGATCATAGAAG
3' ss Score
5.95
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
ATAAAATTGTTTAAATTGTGTGGGCATAATGGAAACCAAGTTCAATACCTTCAGAGAAACCATCAGCTGCAAGTGTGGGTGGGTGTGGGCACAGACAGCCGAGTGTCCACAGCAGACTTCCTTTTGTTAATGTTGCTTCTCAGAACTTAGAATCTGTTACTGTTCACAGTTCTCATCTCTTGTCTCCAATGGACACATCAAGAGTCTATGGTAATGTAAAGACATTTAGGTCTCCAGGGCATAAGCAAGCATCATTCCCATCTCTCTCCACAG
Seq A exon
AAGTTTGTGCAGAACATTTTAAAGGGAAGACAGCAGTTATTTTTTATTGGACTAAATTATGTACAAACGGAGATGACCTGGAAGTGGATAAATGGCTCTGTTTTAAAGCCTAACAT
Seq C2 exon
ATTACGGATCACTGGTTCGGAGGTAGAGAACAGCTGTGCCCTCATCTCACACACAGAAGTGTTTTCAGATTCCTGTTCTTCAGACAACCATTGGATCTGCCAAAAGACCCTGAAACATGTCTGAAAACCTGTGTCCTGACTCCTGATTGTGAATCTCATCTTGATTACTTCATAGTCCACGCCAGATCTCTGCACTGAACATTGTCTGCTGCTGGCCCACCCAGGGCATAGTTAGTGGCACAAAGTATGGACTCCAAAACCACTGTTACTTTTACTGGTGCTCATCTCCACTTTATTATGTAAATGTACACAGACAGATGTGTCATTCTAGGAGAAGAGTTTATCAAAGGAAGCACAGGCCAGCAGGGGGCACTGGAGGCCTTGTGTGGTCCTTGCTTATCTCTGTGTCTTAGGTCATCTACAGACAGCTGTGGAAAACTGTCTGTAAAGTTTGGATTTTAACCCCATCCCTGCTGCAAGCCATTTCACATTTGGGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007811_MULTIEX1-4/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005916=Lectin_C=FE(37.3=100)
C2:
PF0005916=Lectin_C=PD(34.3=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGGCATAAGCAAGCATCA
R:
GCAGCAGACAATGTTCAGTGC
Band lengths:
252-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]