BtaEX6024036 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012029 | KLRB1
Description
killer cell lectin-like receptor subfamily B, member 1 [Source:HGNC Symbol;Acc:HGNC:6373]
Coordinates
chr5:100957062-100961494:+
Coord C1 exon
chr5:100957062-100957216
Coord A exon
chr5:100957606-100957721
Coord C2 exon
chr5:100961350-100961494
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTGTTTCATTTACAGAGA
3' ss Score
10.91
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
AGAGACCAGTTCTGTTAACGTGTCCAATGCACTGGAAACGAATCCGAGATAAATGCTTATATTTTAGTGAAACTTCCAAACCTTGGAATGATAGTCTAGCTGACTGTTCCACAAGAGAATCCAGTCTACTGCTTATTCAAGATCAGGAAGAATTG
Seq A exon
AGACTCATGCAAAACCTGATAAACAAAGAAGGAATTCTGTTTTGGATTGGATTAAATTTTACATTATCAGGGAAGAGCTGGAAGTGGATAAATGGTTCCTTTTTAAATTCTAATAT
Seq C2 exon
ATTACCCATTTTTGGTGATGCTAAAGAAGACTGCTGTGTTTACATATCAAAGACACAATGTATTTCTGATTACTGTGCTGCAAAAAATAGATGGATCTGCCAAAAAGAACTAAAACCTGTCAGAAACAAAGGAATATATTCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012029-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(26.5=51.9)
A:
PF0005916=Lectin_C=FE(37.3=100)
C2:
PF0005916=Lectin_C=PD(34.3=71.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACTGGAAACGAATCCGAG
R:
TGACAGGTTTTAGTTCTTTTTGGCA
Band lengths:
250-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]