HsaEX6065122 @ hg19
Exon Skipping
Gene
ENSG00000111796 | KLRB1
Description
killer cell lectin-like receptor subfamily B, member 1 [Source:HGNC Symbol;Acc:6373]
Coordinates
chr12:9747148-9751249:-
Coord C1 exon
chr12:9751095-9751249
Coord A exon
chr12:9750642-9750757
Coord C2 exon
chr12:9747148-9748017
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTGTTCCATTTATAGATA
3' ss Score
11.46
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
AGAGACCGGGTCTCTTAAACTGCCCAATATATTGGCAGCAACTCCGAGAGAAATGCTTGTTATTTTCTCACACTGTCAACCCTTGGAATAACAGTCTAGCTGATTGTTCCACCAAAGAATCCAGCCTGCTGCTTATTCGAGATAAGGATGAATTG
Seq A exon
ATACACACACAGAACCTGATACGTGACAAAGCAATTCTGTTTTGGATTGGATTAAATTTTTCATTATCAGAAAAGAACTGGAAGTGGATAAACGGCTCTTTTTTAAATTCTAATGA
Seq C2 exon
CTTAGAAATTAGAGGTGATGCTAAAGAAAACAGCTGTATTTCCATCTCACAGACATCTGTGTATTCTGAGTACTGTAGTACAGAAATCAGATGGATCTGCCAAAAAGAACTAACACCTGTGAGAAATAAAGTGTATCCTGACTCTTGACTATGAATCCCATCTCAATTTATTTGCTTCCCATTACTGATCTCTGTACTTGTAGCTGCACATACTATTGGTACTACCTAATAGTGCCACATTTAGTGGCACAAAGTGAACAATTCTGAGAATTGACAACTGTTATGAATCTTACAGAAGTTCATGTTTATCATATTCATTCTATTAAATGAGGAAACAGAGACATAGAGAAAAACGTGCATCGTTTTAAAGAAACAGTGATATTCTATGGTGAAGGAGTGAAGGATGTCCCCGAATATGCCAGATTGGTATATGATTGTTTTGTGTTTAAAACAGTGGAGAAATTGTAGATTCAGAAAGGGAGAGCTGACCTGTCTCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000111796-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(26.5=51.9)
A:
PF0005916=Lectin_C=FE(37.3=100)
C2:
PF0005916=Lectin_C=PD(34.3=70.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAAGAATCCAGCCTGCTG
R:
TGTGCAGCTACAAGTACAGAGA
Band lengths:
255-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)