RnoEX6015282 @ rn6
Exon Skipping
Gene
ENSRNOG00000057410 | Klrb1
Description
killer cell lectin-like receptor subfamily B, member 1 [Source:RGD Symbol;Acc:1587563]
Coordinates
chr4:162789739-162792804:+
Coord C1 exon
chr4:162789739-162789893
Coord A exon
chr4:162790278-162790393
Coord C2 exon
chr4:162792681-162792804
Length
116 bp
Sequences
Splice sites
3' ss Seq
CCCCTCTCTTTTGATTATAGAAA
3' ss Score
7.36
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
TGAGATCAACCATTCTAGAGTGCCCAAGAGATTGGCATTTGCACTGGAATAAATGCTTATTTATTTCTCAAACTTCCAGACCTTGGGCTGAAGGTCTCGCTGACTGTTCTTTGAGAGGAGCCACTTTGCTGCTCATTGGAGATGGAAAAGAATTG
Seq A exon
AAATTATTGCAGGACTTCTCAAAGGGAAAAGGACAACAATTTTTTATTGGACTAAAATATGTACAAGAGGACAAGGTTTGGAAGTGGATGAATGGTTCTATTTTAAATACTAATCT
Seq C2 exon
ATTACGCATCACCGGCAAGAACGAAGAAAACAGCTGTGCCCTCATCTCACACACAGAAGTGTTTTCAGATTCTTGTTCTTCAGACAACCATTGGATCTGCCAAAAGACCCTGAAACGTGTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057410-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149271=Neurensin=PD(38.1=92.3),PF0005916=Lectin_C=PU(26.5=51.9)
A:
PF0005916=Lectin_C=FE(37.3=100)
C2:
PF0005916=Lectin_C=PD(34.3=83.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAAGAGATTGGCATTTGC
R:
ACGTTTCAGGGTCTTTTGGCA
Band lengths:
252-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]