RnoINT0080264 @ rn6
Intron Retention
Gene
ENSRNOG00000007811 | Klrb1c
Description
killer cell lectin-like receptor subfamily B member 1C [Source:RGD Symbol;Acc:1583336]
Coordinates
chr4:162549537-162550285:+
Coord C1 exon
chr4:162549537-162549611
Coord A exon
chr4:162549612-162550130
Coord C2 exon
chr4:162550131-162550285
Length
519 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
ATGTCTTCTCTCTTCTCTAGGGA
3' ss Score
12.65
Exon sequences
Seq C1 exon
TGAGATTCCTAGTGCAAAAACCACTAATAGAAAAATGCAGTATGGCTGCTCAAGAGAATGGGACTGAACCAACAG
Seq A exon
GTAATTGTGTGGCTTGAATTTCCTGAGAATAATAGTTGACACAAAATGTGAGTTACCTCAGTCAAAGTTCACAAACAGCTCTCCATGAGGACATGAGGACACTATACTGCAATGGTTTTGTCTGAGAAGACAGCCATACTGTGAAGACATCTTGGAGAGTCACACAGTTTGTAAATGTTGGCGCTGGGAACTGCATTGAAGCTGTGTGATGGTGACAGCTATGAGCTTTGGCCCTGCTGCCTGCTGATGCTGGTACACATGAGCACTCATAGGCAGATATCAAGTTAAGAAGTGGAATATTTGATGAATTTAATGAATATGTTGAACATGTTACTTTGGTGAAGTTAATTAATAGAAAGAAAATATAAATCAATCCTTTGTCATTATGATTCCCTGACATATGATAGCATTATTTATGCTCCCACATGTACTAATGAAGTAGCTACAGTGTGTAGTTGATTGTGATTGTGATGTAGCAGAAAGAGGGCAGAAATAGAATATGTCTTCTCTCTTCTCTAG
Seq C2 exon
GGAGATCAGCCATACTAGAATGCCCGAGACATTGGCAACCACACCGGAACAAATGCTTAATTATTTCTCAAATTTCCAGACCTTGGGCAGAAGGTCTAGTTGCCTGTTCTATGAAAGAAGCCACTTTGTTGATCATTGAAAATGAAGAAGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007811:ENSRNOT00000010312:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005916=Lectin_C=PU(26.5=51.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATTCCTAGTGCAAAAACCACT
R:
TCAATGATCAACAAAGTGGCTTCT
Band lengths:
214-733
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]