MmuINT1021831 @ mm10
Intron Retention
Gene
ENSMUSG00000030154 | Klrb1f
Description
killer cell lectin-like receptor subfamily B member 1F [Source:MGI Symbol;Acc:MGI:2442965]
Coordinates
chr6:129053183-129053866:+
Coord C1 exon
chr6:129053183-129053257
Coord A exon
chr6:129053258-129053711
Coord C2 exon
chr6:129053712-129053866
Length
454 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
ATGTCCTCTCTCTTCTCTAGGAA
3' ss Score
12.99
Exon sequences
Seq C1 exon
TGAGATTCCTAGTGCAAAAACCACCAATAGAAAAATGCAGTGTGGCTGCTCAAGAGAACAGGACTGAACTAACAG
Seq A exon
GTAATTGTGTGGCTTGAATTTCCTGAGGATAATAGGTAGCAGAAAATTGTGAGTTATCTCAGTCAAAGTTCACAACAGTCCTTGATGAAGACACCATATTGCCATGGTTTTGTCTGAGAAGGCAGCCATACTTTTAAGAACTCATGGAGAGTCACACAGTTTGTAAATGTTGGTCCTGCTGCCTGCTGGTGCTGGTGGTGCACATGAGCACTCATAGGCAGATATCAAGTTAAAAAGTGGAATACTAGTGAATATGTTAAACAGGTTACTTTGTTTGATGTTAATTAATATAAACAAAATATAAAATGAATCCTTTGTCATTAATTATGATTCCCTGATATATGACAGCATTAGTTAGGTTCCCACACACACTAATGAAGTACCTACTGTGTGTAGTTGATTGTGATATACCATAAACAGGGCAGAAATAGAACATGTCCTCTCTCTTCTCTAG
Seq C2 exon
GAAGATCAGCCATACTAGAGTGCCCGAGATATTGGCATCCACACTGGAACAAATGTTTATTTGTTTCTCAAATTTCCAGACCTTGGGCAGAAGGTCGAGATGCCTGCTCTATGGAAGACGCCATTTTGTTGCTCATTGAAAATAAAGAAGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030154:ENSMUST00000032257:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005916=Lectin_C=PU(26.5=51.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTCCTAGTGCAAAAACCACCA
R:
TTTCAATGAGCAACAAAATGGCGT
Band lengths:
214-668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types