RnoEX0047518 @ rn6
Exon Skipping
Gene
ENSRNOG00000007811 | Klrb1c
Description
killer cell lectin-like receptor subfamily B member 1C [Source:RGD Symbol;Acc:1583336]
Coordinates
chr4:162550622-162553705:+
Coord C1 exon
chr4:162550622-162550737
Coord A exon
chr4:162551500-162551533
Coord C2 exon
chr4:162552807-162553705
Length
34 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTTTTTTTCGGAGCTG
3' ss Score
-0.35
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
AAGTTTGTGCAGAACATTTTAAAGGGAAGACAGCAGTTATTTTTTATTGGACTAAATTATGTACAAACGGAGATGACCTGGAAGTGGATAAATGGCTCTGTTTTAAAGCCTAACAT
Seq A exon
CTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAG
Seq C2 exon
ATTACGGATCACTGGTTCGGAGGTAGAGAACAGCTGTGCCCTCATCTCACACACAGAAGTGTTTTCAGATTCCTGTTCTTCAGACAACCATTGGATCTGCCAAAAGACCCTGAAACATGTCTGAAAACCTGTGTCCTGACTCCTGATTGTGAATCTCATCTTGATTACTTCATAGTCCACGCCAGATCTCTGCACTGAACATTGTCTGCTGCTGGCCCACCCAGGGCATAGTTAGTGGCACAAAGTATGGACTCCAAAACCACTGTTACTTTTACTGGTGCTCATCTCCACTTTATTATGTAAATGTACACAGACAGATGTGTCATTCTAGGAGAAGAGTTTATCAAAGGAAGCACAGGCCAGCAGGGGGCACTGGAGGCCTTGTGTGGTCCTTGCTTATCTCTGTGTCTTAGGTCATCTACAGACAGCTGTGGAAAACTGTCTGTAAAGTTTGGATTTTAACCCCATCCCTGCTGCAAGCCATTTCACATTTGGGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007811-'5-8,'5-7,6-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(37.3=100)
A:
PF0005916=Lectin_C=PD(11.8=75.0)
C2:
PF0005916=Lectin_C=PD(34.3=83.3)
Main Inclusion Isoform:
ENSRNOT00000010312fB7450
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACAAACGGAGATGACCTGG
R:
CTGTGTGTGAGATGAGGGCAC
Band lengths:
113-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]