BtaEX0019692 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037534 | KLRF1
Description
Bos taurus killer cell lectin-like receptor subfamily F, member 1 (KLRF1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099120]
Coordinates
chr5:100670787-100674612:-
Coord C1 exon
chr5:100674473-100674612
Coord A exon
chr5:100673585-100673697
Coord C2 exon
chr5:100670787-100670895
Length
113 bp
Sequences
Splice sites
3' ss Seq
ACTCATCACCCACTTTTTAGGCT
3' ss Score
7.52
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GAATGTGCTCATCAGAATGGCTGAAATATCAAGAAAAGTGCTATTGGTTCTCTAATGAGATGAAAAATTGGAGTGACAGTTATAAGTATTGTTTGGGGGAAAAATCTCATCTACTAATTATTCAGAACCAACTTGAACTG
Seq A exon
GCTTTTATACAGAAAACTCTAAAACAATCAAACTATGTGTGGATTGGGCTTAACTTTACTTCCCTGAAAAGAACATGGACCTGGGTGGATGATTCTCCTTTGGATTCAAAGAT
Seq C2 exon
ATTTTTCATAAAAGGACCAGCTCAAGAAAATAGCTGTGCTGCCGTCAAAGAAAATGGAATTTACTCTGAAACTTGCAGCAGTGTTTTCAAATGGATTTGCCAATATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037534_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(26.7=57.4)
A:
PF0005916=Lectin_C=FE(36.6=100)
C2:
PF0005916=Lectin_C=PD(34.7=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTGCTCATCAGAATGGCTG
R:
TCCATTTGAAAACACTGCTGCA
Band lengths:
234-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development