HsaEX0034923 @ hg38
Exon Skipping
Gene
ENSG00000150045 | KLRF1
Description
killer cell lectin like receptor F1 [Source:HGNC Symbol;Acc:HGNC:13342]
Coordinates
chr12:9841812-9845007:+
Coord C1 exon
chr12:9841812-9841951
Coord A exon
chr12:9842321-9842433
Coord C2 exon
chr12:9844418-9845007
Length
113 bp
Sequences
Splice sites
3' ss Seq
GTCCCTCGTCCACATTTTAGGCT
3' ss Score
7.29
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
TACTATGCCAATCAGAATGGCTCAAATACCAAGGGAAGTGTTATTGGTTCTCTAATGAGATGAAAAGCTGGAGTGACAGTTATGTGTATTGTTTGGAAAGAAAATCTCATCTACTAATCATACATGACCAACTTGAAATG
Seq A exon
GCTTTTATACAGAAAAACCTAAGACAATTAAACTACGTATGGATTGGGCTTAACTTTACCTCCTTGAAAATGACATGGACTTGGGTGGATGGTTCTCCAATAGATTCAAAGAT
Seq C2 exon
ATTCTTCATAAAGGGACCAGCTAAAGAAAACAGCTGTGCTGCCATTAAGGAAAGCAAAATTTTCTCTGAAACCTGCAGCAGTGTTTTCAAATGGATTTGTCAGTATTAGAGTTTGACAAAATTCACAGTGAAATAATCAATGATCACTATTTTTGGCCTATTAGTTTCTAATATTAATCTCCAGGTGTAAGATTTTAAAGTGCAATTAAATGCCAAAATCTCTTCTCCCTTCTCCCTCCATCATCGACACTGGTCTAGCCTCAGAGTAACCCCTGTTAACAAACTAAAATGTACACTTCAAAATTTTTACGTGATAGTATAAACCAATGTGACTTCATGTGATCATATCCAGGATTTTTATTCGTCGCTTATTTTATGCCAAATGTGATCAAATTATGCCTGTTTTTCTGTATCTTGCGTTTTAAATTCTTAATAAGGTCCTAAACAAAATTTCTTATATTTCTAATGGTTGAATTATAATGTGGGTTTATACATTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000150045_MULTIEX1-4/4=3-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.004
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(26.7=57.4)
A:
PF0005916=Lectin_C=FE(36.6=100)
C2:
PF0005916=Lectin_C=PD(34.7=94.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCAAATACCAAGGGAAGTGT
R:
TCACTGTGAATTTTGTCAAACTCT
Band lengths:
253-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development