BtaEX0020039 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001206 | LCN15
Description
lipocalin 15 [Source:HGNC Symbol;Acc:HGNC:33777]
Coordinates
chr11:106397537-106398602:-
Coord C1 exon
chr11:106398532-106398602
Coord A exon
chr11:106398271-106398381
Coord C2 exon
chr11:106397537-106397661
Length
111 bp
Sequences
Splice sites
3' ss Seq
GCCGGCTGTCTCCTCTGCAGCCT
3' ss Score
8.44
5' ss Seq
ACAGTGAGG
5' ss Score
3.44
Exon sequences
Seq C1 exon
GGCGGACGGCTGTAACCAGGCGGATGCGGAGTACCTGAGAGTGGGTGCCCAGGGGCACTTCCGAGTCCCAG
Seq A exon
CCTTGGGCTACCTGGACGTGCGCGTGGTGGACACGGACTACAGCTCCTTCGCCGTGGTCTACATCTACAAGGAGCTGGAGGGCGCGCTCAGCACCATGGTGCAGCTCTACA
Seq C2 exon
GCCGGACCCAAGAAGCGAGTCCCCAGGCCCTGGAGGCCTTCCAGGACTTCTACCCGACGGTGGGGCTGCCAGCGGACATGGTGGCCATGCTGCCCAAGTCAGGTACCCCTGAGAGCCCCGCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001206-'2-4,'2-2,3-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.262
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(17.0=100)
A:
PF0006118=Lipocalin=FE(26.2=100)
C2:
PF0006118=Lipocalin=PD(24.1=81.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGACGGCTGTAACCAG
R:
CGGGGCTCTCAGGGGTAC
Band lengths:
190-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development