GgaEX7009659 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NI28]
Coordinates
chr17:506127-507052:-
Coord C1 exon
chr17:506982-507052
Coord A exon
chr17:506665-506778
Coord C2 exon
chr17:506127-506239
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCTGGGATCTTTTAGAAA
3' ss Score
7.13
5' ss Seq
ACAGTGGGT
5' ss Score
2.99
Exon sequences
Seq C1 exon
GCCAGAAGAATGCAAAAAGATTATGATGCTGTTCCAGCAAAGTGGGCAGGCAGGGCACTACATTGGCACAG
Seq A exon
AAAAGGGAGAGAAGAGGGATCTGCGCGTGATGGACACAGACTACGAGCACTACGCCATCGTGTACTCCCAGCAGAAAGACAGCCAGGAACCCAGCACCATGCTGCAGCTCTACA
Seq C2 exon
CAAGGAATCAGGACATGAGCCCACAGCTCCTGCAGAAGTTCAAGGAGCTCTTCCACTCCATGGGCCTGACTGAGGACATGCTGGTCGTGCTGCCGCACTCGGGTGAGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009019-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.205 C2=0.237
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(16.9=100)
A:
PF0006118=Lipocalin=FE(26.8=100)
C2:
PF0006118=Lipocalin=PD(23.9=89.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGAAGAATGCAAAAAGATTATGA
R:
CAGCACGACCAGCATGTCC
Band lengths:
163-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]